Tropheryma whipplei Twist: TWT_071
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Entry
TWT_071 CDS
T00116
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
twh
Tropheryma whipplei Twist
Pathway
twh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
twh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TWT_071 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twh03021
]
TWT_071 (rpoB)
03400 DNA repair and recombination proteins [BR:
twh03400
]
TWT_071 (rpoB)
Enzymes [BR:
twh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TWT_071 (rpoB)
Transcription machinery [BR:
twh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TWT_071 (rpoB)
DNA repair and recombination proteins [BR:
twh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TWT_071 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAO44168
UniProt:
Q93GF2
LinkDB
All DBs
Position
73769..77335
Genome browser
AA seq
1188 aa
AA seq
DB search
MLQSFSLSRHLPSYCGRLWLCRGFSPSCPLWVSLFGVGFLASAKGKRVCAIGRSSLGKIS
DPLEVPNLLDLQLDSFDWLIGGPRWRVALDAYRKNPSGAPIAEKSGLDEVFDEISPIEDS
AGNMQLNFSKPVLEAEELSVRECRVRGRTYSAPLYVEAEFMNHDTGEIKTQTVFMGDFPL
MTDKGTFVINGTERVVVSQLVRSPGVYFERTPEKNSEKDLFSGRIIPARGAWLEFEVDRH
DQLGVRVDRKRRQPVIFFLRAIGMTDDEIRDAFGEFESISVQHEKNIGLSRDDALREIYR
RVRPGEQASAEAGRALLENFYFTSRRFDLARVGRYKVNRKLGVDVDPTRMVLTRSDIIAT
IRYLAALHLGFSEVAVLNSNKSVPISTDDIDHLGNRRIRPVGELVQNQLRAGLARMERVV
RERMTTQDIEAIIPQTLINVMPIVAALKEFYGTSQLSQFMDQNNPLAGLTHKRRLSALGP
GGLSRERAGVEVRDVNPSHYGRMCPIETPEGPNIGLIGSLACYSRVNSFGFIETPYRRVV
NGKVTDDIEYMTATQEDEHAIAQASTPLRPDNSFVDERVLVRRKGGEVEVVPADQVDYMD
VSGRQMVSVATSLIPFLEHNDANRALMGSNMQRQAVPLLVTESPLVGTGMERYVAIDAGD
VLIAEDPGIVGDVSADVVTVKQDDGKHRDYHVGKFVRSNQGNCYNQRVVVRSGDRVEKGT
VLADGPCTDKGELSLGRNLLVAFMPWEGYNFEDAIIISQNLVKDDTLSSIHIEEHEVSTR
DTKLGSEEITRDLPNVSMDYIKDLDERGIIRIGAEVGPGDILVGKVTPKGETELSAEERL
LRAIFNEKSMEVRDTSLKVPHGQQGTVIDVKLFDAVDGEDKLGAGINQRVVVYIAHKRKI
TEGDKLAGRHGNKGVISKILPVEDMPFMADGTPVDIILNPLGVPARMNFGQVLETHLGWI
SKQGWKIEGDPDWAKDIRVREAQPDSRVSSPVFDGISEGEITGLFSSVFPNRDGERAVGS
DGKAILYDGRTGEPFPEPISVGYMYVLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFG
GQRFGEMEVWALEAYGAAHALQELLTIKSDDVVGRVKVYDAIVKGYPIPTPGVPESFKVI
VKEMQSLCINIEVVSDGEDDVSADAETLQIEEGLDTSPKVEVGSLEEV
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaatcgttctcgctgtctcgccacttgccttcatattgcggtcggctctggctt
tgtcggggtttttctccctcttgcccgctttgggtgtctttgtttggggtaggttttttg
gcttctgctaagggtaaaagggtttgtgcgataggtcgctcctctctcggtaagatctct
gatccgcttgaggttccgaaccttcttgatttgcagctcgatagttttgactggctcata
ggcggccctaggtggcgcgtcgcccttgatgcttaccgcaaaaatccgtcaggcgcccca
attgccgaaaagagtgggctggatgaggtgtttgatgagatatcccccatagaagattcg
gctggcaatatgcagcttaatttctccaagccggttctggaggccgaagagttgagcgta
agggaatgccgtgttcgaggcaggacctattcggcgcccctgtatgttgaggccgagttc
atgaatcatgatacgggcgagataaagactcagacggtttttatgggcgatttcccgctt
atgactgacaagggtacattcgtcataaacggcaccgagagagttgttgtctctcagctt
gttcgcagccctggtgtttattttgagcgcacgccggaaaaaaacagtgaaaaggatctt
ttttcgggcagaataatccccgctcgcggtgcttggctagaattcgaagttgacaggcat
gaccagcttggcgttagggttgacaggaagcgcaggcagccggttattttctttctgaga
gcaattggcatgactgatgatgagatcagggatgcatttggcgagtttgaatcaataagc
gtccagcacgaaaagaatattgggctgtccagagatgacgcgctccgggaaatataccgt
cgcgttcgtccgggggagcaggcatcggctgaggctgggcgtgcactcttagagaatttt
tactttaccagcagacgttttgacctggcaagggttggaaggtacaaagtaaatcgcaaa
ctcggtgttgatgttgatccaactcggatggttcttacgaggtcggatattatcgcaaca
attcgttatctcgcggccttgcatctcggtttctccgaggttgcggtgctaaacagcaac
aagagtgtaccaatttcaaccgatgatattgaccatcttggtaataggcgcattagaccg
gttggtgagttggtgcaaaaccagctccgggctggtctggccagaatggagcgggttgtg
agagagcgcatgacaacccaggatatagaggcgattatcccgcagacactcataaatgtc
atgccaattgttgcagcgctgaaggagttttatggcaccagccagctctcgcagtttatg
gatcagaataacccccttgccggccttacgcacaagaggcgcttgtcagctcttggcccc
ggtggactgtcccgcgaacgtgccggtgttgaggttcgagacgtaaatcccagtcattac
ggcaggatgtgtccgatcgaaaccccagaaggtccaaatattggccttatagggtcttta
gcgtgctattccagggtgaacagtttcggctttatagaaaccccatatagacgtgttgtc
aacggaaaagtcacagacgatattgagtatatgacagcaacacaggaagatgagcatgcg
attgcccaggcaagcactccgctgcgaccggacaactcgtttgttgatgagcgtgttctg
gttcgccgaaaaggtggagaggtcgaggttgtaccggccgatcaggttgattatatggat
gtgtctggacgtcagatggtgtctgttgcaacttcgcttatacccttccttgaacataat
gacgctaaccgtgctctcatgggatcgaatatgcagagacaggctgtaccacttctggtt
acggagagtcccctggtcggcacaggtatggagcggtatgtagcgatcgatgcgggtgat
gttttaattgccgaggatccgggcattgtgggggatgtttccgctgatgttgtcactgtc
aagcaggatgacgggaaacatcgcgactaccatgttggtaaatttgttcgttcaaatcag
ggcaactgttacaaccagcgagttgtggtccgatccggagatcgtgtagaaaaaggtaca
gttcttgcagatggtccatgtactgacaaaggtgagcttagtcttggtagaaatcttctg
gttgctttcatgccctgggagggctataactttgaggatgcgataattatcagccagaat
ttggtcaaggacgacaccctttcgtcaatccacatagaagaacatgaggttagcacccgg
gatacgaagctgggcagtgaagaaataacgcgagaccttccgaatgtaagcatggattac
ataaaggacttggacgaacggggtattatccggattggcgctgaggttggccctggggac
attttggttggtaaggtgaccccaaagggcgagaccgaactcagcgcggaagagcgtttg
ctgagggctatctttaacgagaagagcatggaggttcgcgacacaagtttgaaggtccca
cacgggcagcaggggaccgtaatcgatgttaagttgtttgatgcggttgacggtgaagat
aagctgggtgccggcataaatcagcgggttgttgtgtacatagcgcataagcgcaagatt
acggagggagataagcttgctgggcgccatggcaacaagggtgttatttcaaagatcctt
ccggtagaggatatgcccttcatggctgatgggacccccgttgatataatccttaatccg
ctcggcgtgcccgcgcgtatgaacttcgggcaggttttggaaacccatttggggtggatc
tctaagcaaggatggaaaatagagggtgatcctgattgggcaaaagatattcgggtgcgc
gaggcgcagcctgatagtagggtttcaagtccggtttttgatggaatttccgaaggggag
ataaccgggcttttttcttctgtatttccaaaccgtgatggtgagcgtgctgtcggttct
gatggtaaggctattctctatgatggccgcacgggggagcccttcccggaacctatttcc
gtcggttacatgtatgtcctaaagttgcaccatctggtagacgacaagattcatgctcgc
tcaacaggaccgtattcgatgataacccagcaaccgctgggcggcaaggcacaattcggt
gggcagcgcttcggagagatggaggtgtgggcgcttgaggcatatggtgcagcgcacgca
ctccaagagttgctaacaataaagtctgatgacgttgttggccgggtaaaggtatacgat
gcgattgtcaagggttatccaattcctacccccggtgtgcctgaatcatttaaggttatt
gtcaaggaaatgcagtctttgtgcataaatattgaggttgtttctgacggtgaggatgat
gtttccgctgatgctgaaaccctacagatagaagaaggtctggatacgtctcccaaggta
gaagttggttcgcttgaagaggtctag
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