Tripterygium wilfordii (thunder duke vine): 119983087
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Entry
119983087 CDS
T07256
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119983087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119983087
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119983087
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119983087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
119983087
NCBI-ProteinID:
XP_038682679
LinkDB
All DBs
Position
17:2789772..2810823
Genome browser
AA seq
2419 aa
AA seq
DB search
MPTLSSTIPFQIRFMLQSVNEANADSIYRELCQFADHGIEGSVVILQTCLDHLHFDPTEL
KNMQLESVLMSIFTYIMEKPNFSTIFCQSLEGIDISEGYLQNLSNCFHLSASEKVGIGLA
LSDSENPDTSLCGKFFCMAQIEELSAKRGLLNSSEQFQSILMFLQRSEGLSKHVDYFVQM
LSLLQSEDANSFVLTPLLSDEMREANFSRNLELFHLSKGDDFDAILSEMEKEMSMGDILK
ELGYGCTVDASHCGEILSLFLPLTEITISKILGTVAQTYAGLDDNQNTFSTFSMALGYNV
SSEQPSFSSWNIDVLVKTIKQLAPNTNWIQVIENLDHEGFYMPNEEAFAFFMSVYKHACQ
DPFPLHAICGALWKNTDGQLSFLEYAVKAPPEIFTFIHSSRQLVYMDALHSHKLQIGQTN
HAWLCIDLWDVLCELAERGHARSVRSMLENPVKHCPEVLLLGMAHTSTAYNLLQNEVFFT
LFPMMVKSTVANGLVLHLWHINPDIVLRGFVDAYSIEPDTLTRILDICQELKILSSALEM
IPSPCSIRLAALASRKELVDLEKWLSYNLITYKDFFFEECLKFLREIQFGGEQDLPAKSS
QHSVTVINLYMETSSTFSKVLKAHTGLLTSSELSEEMEQLHITTMDSNPKLQNGGAADSS
VSEGYADDIEAEANSYFHQMFSCQLSIDAMVQMLARFKESSVQREQSIFECMIANLFEEY
QFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISSGHFEVDGGSNASGAHHQG
SSQATSGHGEVNGHSIAQSGQHVSSTLQLQQRQEGLIDGHHKASVALLNDMKPPLSSGGQ
PSVPPLVDASGIQKTQNAIGAPAMLSSSPGFVRPSRGASSTKFGSALNIKTLVAAAERRE
TPIEAPASEIQDKISFIINNISAANVEAKAKEVTEILKEQYYPWFAEYMVMKRASIEPNF
HDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLA
EIYSMPNLKMNLKFDIEVLFKNLSVDLKELTPTSLLKDRRREVEGNPDFSSKDVGISQPQ
IVGEVKSGIISQLNHVELPLEVASPPNSSGHTHMLSQYAAPLHLSSGTLMEDEKLAALGL
SDQLPSAQGLFQATPAQSPFSVTQLPTPIPNIGTHVIINQKLNALGLHLHFQRVVPIAMD
RAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESEETRIYNAAHLMVASLSGSLAHVTCK
EPLRGSISSHLRNSLQNLGIANELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI
AQQLSLRRKHRESIGQTFFDANVYAQGSMGVLPEALRPKPGHLSLSQQRVYEDFVRLPWQ
NQSSQSSHAMPPGPSIPSSATGVTSSYNSSSGQLSSGFSSGPGNSGFEAVPRPLDAASEG
MEPSSAALLSASSIHTGTPDGVIQQSSDNLVSASFSSAASAPELHSMEPSDDVKELGVSS
QPLPSHTGSERLGSGISESSLPTRDALDKYQIVAQKLESSISNDGVEAEIQGVVAEVPEI
ILRCVNRDEAALAMAQKVFKALYENASNTAHVNAFLAILIALRDVCKLVVKELTSWVIYS
DEERKFNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFAVSLLQTLVIEEPSLI
SELHSFVDALAKVAAKPGSSEPLKQLIEIARNPVANVAALSGLTAGKEDKARQSRDKKPT
GYSTTMRDEHSNVESLEPDPTGFRDKVSSLFVEWYKICELHGTNEAACTHYILGLHQDGL
LKGNDMIDRFFRILVELSVSHCLSYEVNSGALHAPQQGQTLSFIGIDIYAKLVFSILKYS
PVDQGSSKLSLLSRILAVINRFIQKDSEEKKASFHPIPYFRLFINWLLDLSSLDPVTDGS
NFQILAAFANAFHALQPLRVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPHVQRLLVDLF
QFLEPYLRNAELGGPVRLLYKGTLRMLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNII
LSAFPRNMRLPDPSTPNLKIDLLPEIREPPHILSEVDAALKAKQIKADVDDYLMTRQPGS
FLTELKQKLLLPPSDTALAGTRYNVPLINSLVLYIGMQAIQQLQAKGPHSQSSTSVPPTK
LLVDTALEVYQTLASELDTEGRYLLLNAVANQLRYPNNHTHYFSFILLYLFAETKQEVIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWNQSFIRCAPEIEKLFESVARSCG
GPKPMDESMVSGWASENAH
NT seq
7260 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccttgtcttcgacgattccgttccagattcgatttatgttgcagagcgtgaac
gaagccaacgccgactctatttaccgagagctctgtcagtttgctgatcatggaattgag
ggaagtgttgtgattctccaaacctgcttggatcacttgcattttgacccgacagagttg
aaaaacatgcagctggaatcagttctgatgtcaatttttacttacattatggagaaacca
aatttcagtacaatcttttgtcagtcactcgagggtatagatatcagtgaaggatatctg
cagaatttgtcaaattgctttcacttatctgcatcagaaaaagttggtattggtcttgct
ttgtctgattctgaaaaccctgataccagtttgtgtgggaaatttttttgcatggctcag
atagaggaattgtctgccaaacgtggtttattaaattcttctgagcaatttcaaagcatc
ctgatgttcctccaacgatctgagggcctctcgaagcatgtagattactttgtgcagatg
ttatctttgttgcagtcggaggatgctaattcatttgttctcactccattgctttcagat
gagatgcgtgaggccaatttttcaaggaacctggaattgtttcacttaagcaaaggagat
gattttgatgctattttaagtgagatggagaaggaaatgagcatgggagatatactgaaa
gaactaggctatggatgcacagttgatgcctcacactgtggagagattttgtcactcttt
ttgcctttgactgagattaccatttctaagatacttggcactgtggctcaaacctatgca
ggtctggatgacaaccagaatacattttcaaccttcagcatggcccttgggtataatgtt
tcatctgaacagccatcttttagctcctggaatattgatgtccttgtgaaaaccattaag
caacttgctcctaataccaattggatccaagttattgagaatcttgatcacgagggcttt
tacatgcctaacgaggaggcgtttgcatttttcatgtctgtgtacaaacatgcatgtcag
gatccattccctcttcatgccatttgtggcgctctatggaagaatacggatggtcaacta
tcttttcttgaatatgctgttaaagcacctcctgagatatttaccttcattcattcttca
agacagctggtctatatggatgcattgcatagccataagcttcaaattggtcagacaaat
catgcgtggctgtgtatcgacctttgggatgtgctttgtgaactggctgagaggggtcat
gctaggtccgtccgatcaatgcttgaaaatccagtgaaacactgtcctgaggtcttactg
cttggaatggctcataccagtactgcgtataacctcctgcaaaatgaagttttttttact
ctttttcccatgatggttaaaagtactgtggcgaatggtctggtgctacatctgtggcat
attaatcctgatattgtgttgcgaggatttgtggatgcttacagcattgagccagacacc
ttgacaagaatattggacatctgtcaagagctaaagatcctgtcttcagctctagagatg
attccttccccttgcagcattagattggcagcccttgcttcacgaaaagagcttgtagac
cttgagaagtggctgagttataatctaatcacatacaaggattttttctttgaggagtgt
ctgaagtttttaagagagattcagtttggtggggagcaggatttgcctgccaaatcttct
cagcattctgttactgttataaatctatatatggagacaagttctaccttctcaaaggtc
ctcaaggctcatactggtcttttgacctcatccgaactttctgaggaaatggaacagttg
cacataacgaccatggattctaatccaaagctgcaaaatggtggtgctgcagattcttct
gtctctgaaggatatgcagatgatattgaggcggaagcaaactcttacttccatcaaatg
ttttcttgtcagttaagcattgatgcaatggttcaaatgcttgctaggtttaaggaatct
tctgtccagagggaacaatcaatttttgagtgcatgattgcgaatctgtttgaggaatac
caattcttcccaaagtatcctgaaaggcagcttaaaatcgctgctgttctttttggctct
gttatcaagcaccagcttgttactcatctcacacttggaattgctctacgtggtgtttta
gatgctcttcgtaaacctgcagattcaaaaatgtttgtatttgggacaaaggctttggag
caatttgtggatcgtttgattgagtggcctcagtattgcaaccatatcttacaaatatct
catctgcgcgctactcattctgaacttgttgctttcattgaacgtgcgctggctaggatt
tcatctggccattttgaggtggatgggggcagcaatgcttctggtgctcatcaccaggga
tcctcacaagctacttctggacatggggaggtaaatggtcatagcattgcgcagtctggg
caacacgtttcttctacattgcagcttcaacagaggcaagaaggtcttattgatggccat
cataaggcttctgttgctttattgaatgacatgaagccgcctttatcttctggaggccaa
ccttcagttcccccactagttgatgcttctggtattcagaagacacagaatgccattggt
gctcctgctatgttgtcttcttcccctggttttgtccgtccttctcgaggagcttcttct
accaagtttggctcagctttaaacatcaaaacacttgttgctgccgcggagagaagagaa
actcccattgaggctccagcgtccgagattcaggacaagatttcatttataattaataac
atctcagctgcaaatgttgaagctaaagcaaaagaagttactgaaatattgaaagaacag
tactatccttggtttgcagaatacatggtgatgaaaagagcaagcattgagccgaatttt
catgacttgtacttgaagttcctcgataaagttaactcaaaggctttaaataaagagatt
gttcaagccacttatgaaaactgcaaggttcttctaggttcggaacttataaaatcaagt
tcagaagagcgttcattacttaagaatttgggaagctggcttggaaaattaaccattggc
agaaatcaagttttaagggctcgcgaaatagatccaaaatcattgataatcgaggcgtat
gagaagggattgatgattgcggtgattccatttacttcaaagattcttgagccgtgccaa
agtagtcttgcttatcagcctccaaacccttggaccatgggtattcttggattgctagca
gagatctattcgatgccaaacttgaaaatgaatctcaagtttgacatagaggtgctattc
aagaatctcagtgttgacttgaaggagctaacgccaacttcacttctcaaggatcgaaga
agagaagttgaagggaatcctgatttttctagtaaagacgttggaatatcacaacctcag
attgttggtgaagtcaagtcaggaataatatctcaactaaatcatgttgagctacctctt
gaagttgctagcccacccaattctagtgggcatacacatatgttatctcagtatgctgct
ccccttcatctttcttccggtacattgatggaggatgaaaagctggctgcactaggcttg
tcagatcaacttccttctgctcaggggcttttccaagctactcccgcccagtcgcctttc
tctgttactcagcttcccacaccaatacctaacattggaactcatgttattatcaaccag
aagcttaacgcattgggcttgcacttacattttcagagagtggttccaattgcaatggat
agagctatcaaggaaattgtgtcgagtatcgtgcaacgcagtgtttctatagcaactcag
acaacaaaagagcttgttttgaaggattatgctatggaatcagaggagacgcgtatatat
aatgctgcgcacttgatggttgcaagtttgtctggaagtttagcccatgtgacctgcaag
gaacccctacgcggttcgatatcaagtcatttaagaaattcccttcagaatttgggtata
gcaaatgaacttctggaacaagctgtgcaacttgttacaaatgataatctggatcttggt
tgtgccgtaattgagcaggctgctacagataaggcaatacaaactattgatggggagata
gctcagcagctttctcttagaaggaagcacagagaaagtattggccaaacgttttttgat
gcaaatgtgtatgcacaaggttctatgggtgttttaccggaggcccttcgccctaaacct
ggacacttgtctctctcgcaacaacgagtttatgaggactttgtccgccttccctggcaa
aatcaatctagccagagctcccatgctatgcctccgggcccttctataccatccagtgct
actggtgtaactagttcatataattcatcttccggccaacttagctcaggcttctcttct
ggtcctgggaattcaggatttgaagcggttcctcggccactggatgctgcttctgaggga
atggaacctagttctgctgcacttcttagtgcctcatccattcatactgggacacctgat
ggtgttatccagcaaagttcagataatttggtcagtgcctcattctcttctgctgcttct
gcccctgaattacattcaatggagccctctgatgatgtgaaagagctgggtgtttcctcc
cagcctttaccttcacatactggctctgagcgccttggaagcggcatctctgaatcttca
ctacccacaagggatgctctggataagtatcagattgttgcgcaaaagttggaaagttcg
attagcaatgatggcgtggaagcagagatccagggagtggttgctgaggttcctgagatc
atacttagatgtgtcaatcgagatgaagctgccttggctatggctcagaaggttttcaag
gcgttatatgagaatgcatcgaatactgctcatgttaatgcctttcttgcaattctgatt
gcacttcgtgatgtctgcaagcttgttgttaaggagcttaccagttgggtgatttactcg
gatgaggagcgaaagttcaacaaggatattacccttggacttattcgcagtgaactgctc
aaccttgctgaatacaatgttcacatggcgaaactgattgatggggggaggaataagggt
gcaacggagtttgctgtttccctactgcaaacgttggtcattgaagaacccagtctcata
tcggaacttcacagttttgttgatgcattggccaaggttgctgcaaaacctggttcttct
gagccactaaagcagctgatagagattgccaggaatcctgttgccaacgttgctgctcta
tctggtttaactgctggaaaggaggataaggcaaggcaatctagagacaaaaagcctact
ggttattctaccaccatgagggatgagcacagcaatgttgagtccttggaaccagatcct
actggttttcgcgataaggtttcctcactatttgtggaatggtacaagatatgtgaacta
catggcacaaacgaggctgcttgtacccattacattttaggattgcatcaagatgggctg
ctgaaagggaatgatatgatagatcgcttttttcgcatcctcgtggaactctctgtttca
cattgcctctcttatgaggttaactctggtgcacttcatgcacctcaacaaggacagact
ctatcattcattggcattgatatttatgcaaaacttgtcttttcaatcctcaagtattct
cctgtggaccaaggttccagtaagctctctcttttatcaaggattttggctgttataaat
agatttatacagaaggactcggaagagaagaaagcatctttccatccaataccatatttc
agattatttattaactggcttctagatctcagttcactggatcctgttacagatggttca
aactttcagattttggcagcttttgccaatgcattccatgctttgcagccacttagagtt
cctgcattcagctttgcatggcttgaattggtgagtcataggagcttcatgccaaaattg
ctcactggaaatggtcagaagggttggcctcatgtccaacgattgctggtagatctgttc
caattccttgagccatatctgaggaatgctgaattgggagggccggttcgtttgctttat
aaaggtacacttagaatgctgctggtgctacttcatgatttcccagagttcttgtgcgac
tatcatttcaccttttgtgatgtgattcctccaagctgcatacaaatgcgtaatattatc
cttagtgcatttcctcgcaatatgagactgcctgatccatctactcccaatttgaagatt
gatttgcttccagaaatcagggagccgcctcacattctctctgaggttgatgcagctctt
aaagcaaagcagattaaagcagatgtagacgattatctcatgacaaggcaacctggttcc
tttctgacagaactgaagcaaaagctactcctccctccaagtgataccgctttagctgga
acccgttacaatgtaccgttaatcaactcccttgtgctgtatattggaatgcaggccatc
cagcagttgcaggcaaaaggccctcactcacaatcatcgacctctgtccctccaactaaa
ctcttggtggatactgcattggaggtctatcagactcttgcatcagaactggatactgaa
gggcgctacctcctcctaaatgctgttgcaaaccaactccgttatccaaacaatcatacg
cattacttctccttcatcctactgtacttatttgctgaaacaaaacaggaggttatccag
gagcaaattactagagtgttgctggaacgccttatagttaatagacctcatccatggggt
cttttgattaccttcatcgaactcatcaagaatccaagatacagtttctggaaccaatcc
ttcattagatgtgcaccagagattgaaaaactttttgaatcagttgcgagatcatgtggg
ggtccaaaacccatggatgagagtatggtgtcggggtgggcatctgaaaacgcacactga
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integrated database retrieval system
