Tripterygium wilfordii (thunder duke vine): 119996766
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Entry
119996766 CDS
T07256
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119996766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119996766
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119996766
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119996766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
119996766
NCBI-ProteinID:
XP_038699460
LinkDB
All DBs
Position
4:complement(7558931..7570181)
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AA seq
903 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWTKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEMEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFDDVDELYNTLPLDKVES
LEDLVSIVPPLAKVAPVLSLKTPLSTSASQMPATPTSNHQPGTSVHDQFDDTASQDSNSD
SIARTPPAKNSVVGSPAASTLTGSHATPVPVNVPSNSLPAISAASANLPGSTSVHGGLEN
ASTVVTSSTGSLTGSVKEDEITSLSGYRPSPTLADAGLIRGIGRGGFSSQPTSSIPLSSG
SVVPSNGALGTLPLTLDTAKRNLMVADERLGSSAMVQPLASPISNRMTLPQAIKANDGTG
SVDSANIGEAAALGGRPFSPTVPGMQWRPVSSFQSFQNQNEPGQFRGRTEIAPDQREKFL
QRLQQVQQQGHSTILGMSSLTGGNHKQFSAQQQNPLLQQLNSQSSAVSSQSSLGLGIQGL
GLNNVSSVTSQQPTSIHQQSNQQALMSSGLQDADTGHLKLEESQQQQNLPDNSNPESAPS
SGFGKNPVNEDDLKDPYTVDAPTGLSGSVADLPQVPRDIDLSPGQPLQSNQPSGGLGVIG
RRSVADLGAIGDSLSASYASPGVVHDQMYNLKMLEAAYYKLPLPKDSERLRSYTPRHPAA
TPASYPQIQAPIVNNPAFWERLSIDSYGTDTLFYAFYYQQNTYQQYLAARELKKQSWRYH
RKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIANDESQHGWCQRIKTEFTFEYNYLEDEL
MVS
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagccgcaagttacaaggagagattgatcgcgtcttaaagaaggttcaagaa
ggcgttgacgtcttcgacagtatctggaccaaggtttacgacactgacaatgcaaaccag
aaggagaaatttgaggcagatctgaaaaaggagatcaagaagctgcagagatacagggac
cagattaagacatggattcagtcaagcgagatcaaggataaaaaggttagtgcctcttat
gagcaggccctggtggatgctcgcaagcttatagagcgtgaaatggagagatttaagatt
tgtgaaaaggagacgaagacaaaagcattctctaaagagggactgggtcaacaacccaaa
actgatccaaaggagaaggctaaatcagagacaagagattggttgaacaatgtggttggg
gagttagaatctcaaatcgatagctttgaagctgagatggagggactatctgttaagaaa
gggaagacaaggccaccccgactgacacatttagagacgtctatcacacggcacaaggct
catataatgaagttagaattgatattaaggctattggataatgacgagttaagtcctgag
caggtcaatgatgtcaaagacttcttggatgattatgttgaacgcaaccaggatgatttt
gatgaatttgatgatgttgatgagctttacaacacattaccattagacaaagtggagtca
cttgaagatctggtttcaattgttcctcctctggccaaggttgctcctgttcttagcttg
aagactcctctgtcaacatccgcatcccaaatgcctgctactccaacctctaatcatcag
ccaggcacttctgtccatgaccaatttgatgatacagcttcccaggatagtaattctgat
agcattgcacgaacgccgcctgcaaaaaattctgtggtgggttctcctgctgcatcaaca
cttactgggagtcatgcaactcctgttccagtgaatgttccgtctaatagtttgcccgca
atatcagctgcctccgctaatcttcctggctcaacttctgtgcacggtggtttagaaaat
gctagtactgttgttacttcatccacgggaagtttgacaggttctgtaaaggaagacgaa
atcacaagcctctctggttataggccatccccaactcttgctgatgctggactaataagg
ggtattggtagaggtggcttctccagccagcctacatctagcatccctcttagttcgggc
agtgtggtccccagcaatggggctcttggtacactgcccttgacgttggatacggcgaag
aggaatttaatggttgctgatgaaagacttgggagcagtgcaatggtacagcctctagct
tccccaataagcaatagaatgaccttgcctcaggctatcaaggctaatgatgggactggc
tcagttgattctgctaatattggtgaggctgctgctttaggtggtaggcctttttcccct
acggttcctggcatgcagtggaggcctgtaagttcctttcaatcctttcaaaaccagaac
gagccggggcagtttcgtggaagaactgaaatagcacctgatcaaagggagaaattctta
caacggctccagcaagtgcagcagcaaggtcacagtaccattcttggcatgtcttctctt
actgggggaaatcataaacaattttctgcccaacaacaaaatccactcttgcaacagctt
aattctcaaagctcagctgtttcttcgcagtctagtttgggacttggaatccaaggactg
ggtctcaataatgtttcatctgtgacttcacagcagccaacttccatccatcaacagtct
aatcaacaagcactaatgtcaagtggtctacaagatgctgacactggacacttgaaacta
gaggagtcgcagcaacagcaaaatttacctgataattcgaatcctgaatctgcccctagt
tcggggtttggcaaaaatcctgtgaatgaggatgacttgaaagatccatatacagtggat
gctcctacaggattatctggttctgtggcagatcttccccaagtgccaagagatattgat
ctctctcctgggcaacctttacaatccaatcaaccttctggtggccttggggttattgga
cgaagaagtgttgccgacctcggggcaattggtgatagcctcagtgcatcatatgcgagc
cctggggtagtgcatgatcagatgtacaatctgaaaatgcttgaagctgcatactacaaa
cttcctctacccaaggattcagaacgtctaagaagctacactccaaggcaccctgctgct
acacctgctagctatccccaaattcaggcaccaattgttaataatcctgcattctgggaa
cgtctatctattgatagttatggaactgatacactgttctatgcattttactaccagcag
aacacttatcagcaatatttggctgcacgtgaactgaagaagcaatcttggagatatcac
agaaaatacaacacatggtttcaacggcatgaggagcccaaaatagccactgatgaatat
gaacaggggacatatgtctactttgattttcatattgccaatgacgaatcccaacatggg
tggtgtcaaaggatcaagacagagtttacttttgagtacaactatcttgaagacgaactt
atggtttcgtag
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