Tripterygium wilfordii (thunder duke vine): 119999239
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Entry
119999239 CDS
T07256
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119999239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119999239
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
119999239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_11
TPR_1
TPR_17
TPR_16
TPR_14
TPR_12
TPR_8
TPR_6
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_7
ARM_TT21_C
ANAPC3
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
119999239
NCBI-ProteinID:
XP_038702639
LinkDB
All DBs
Position
6:complement(12683985..12697364)
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AA seq
1181 aa
AA seq
DB search
MMEIKDEFNDIRLKQFMELLEVNPNDASSQFDLGEYLWGKGGEFKEKAAEHFVLTVKLNP
QNAVAFRYLGHYYRTVSIDYQRALKCYQRAVTLVPDDSDSGEALCNLLDQGGKETLVMAV
CREACDKSPRAFWAFRRLGYSLVRQNKWSEAVQSLQHAIRGYPTSAESWEALGLAYQRLG
MFTAASKSYGRAIELEDTRIFSLVESGNIFLMLGFFRKGVEQFVQALKISPENVDAHYGL
ASGFLFLSKECINSGAFRWGASVLEDARKVANQIIHRAGNMSCAWKLHGDIQLAYAKAFP
WTKEGQNTESDVKSFTASIFSWKQTCHFAAISARTSYQRALHLAPWQANIYADIAMASDF
VSSFKESHGQELKPWQLPEKMALGSLLLEGDNCEFWVALACLSSDCALRQHALIRGLQLD
VSLSIAWAYLGLLYREEGEKKLARQAFDYARSIDPSLALPWAGMSADSNARESTPDEAFE
SCLQAVQILPLAEFQIGLAKLAFLSGHLSSPQVYGAVQQAVQRAPQHPESHNLNGLVCEA
RFEYQAAIASYRLARCAITHSPGTSSKSYLRDIAANLARALCHAGNSFEAVQECEELKKQ
GMLDMGGLQVYAFSLWKQGNHDLALSVLRDLAASVSTLERASVASSVSFICRLLYRISGK
DSAITSILKMPMDLFLNSKMSFIVSAIHALDQNNRLESVVSSSRKFLKSQTEITEMHYLI
ALGKLIKPGSEHFLGFNGGVSHLRKVLHMYPNSNLIRNLLGYLLLSREEWKDAHVANRCC
HIDAHGSSNKEGLKSACEIMGAGAVACYVNGNSNLRLSFPTCSCQCLNGPGAVQELQKYL
HREPWNHNARYLLILNLLQKAREERFPRHICVVLERLIVVALSNEFYSGKEMYHQYQKFQ
LLLCASEISLQIGNQADSINHAKQASGLLVPDSYHFFVHLLLCRAYAAEGNRIKLQEEYM
KCLEVKTDYHIGWVCLKIVESQYEVQTDANILELSFKECSKLRIRSWDMWMGVFNLVLGL
MSMRNQDFLTAEQLLAQACSLVGYESCHCLCHGAICMELARQFSSMRFLSLALGSLTKAQ
ENSPIPLPVVSVLLAQVVGSLGLKAKWEKNLHLEWFSWAPEMRPAEVYFLMHLLAKESKG
KADHPSNVESCQSPEKWVIRAIHTNPSCIRYWKALQKLLEE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgatggagataaaggacgagttcaacgatattcgtttgaaacagttcatggaacttctg
gaagtcaatccaaatgacgcctctagtcaatttgatctaggagaatacttgtggggcaaa
ggaggagagtttaaggaaaaagcggctgagcatttcgtgttaacggtgaagttaaaccct
caaaacgcagtggctttcagatacttagggcactattacagaactgtttcaattgattac
cagagagctctcaagtgctaccagagagctgtcaccctcgtccctgatgactcagattct
ggggaagctctctgtaatctactggaccaaggtggtaaggagactttggtaatggcagtg
tgtcgtgaagcttgtgataagtctcccagggccttttgggcttttaggagattgggctac
tcgctggtacgtcaaaacaaatggtctgaagctgtgcagagtcttcaacatgccattcga
ggctatcccacctctgctgaatcatgggaagctttgggtcttgcctaccagcgacttggc
atgtttacagcagcttcgaagtcgtatggtcgagctattgagttggaagacaccagaatc
ttttctcttgttgaaagtggaaatatctttttgatgcttggcttctttagaaagggagtt
gaacagtttgtgcaagctctgaagatctcacctgaaaacgtggatgcgcactatggcctt
gcttctggctttctgtttttgtcaaaggaatgcataaattctggtgcattcaggtggggg
gcatcagtgctagaggatgcacgtaaagttgcaaatcaaatcattcatagagctggaaat
atgtcttgtgcttggaagctgcatggtgatattcaacttgcatatgcaaaagcttttcca
tggacaaaagagggacagaacacagaatctgatgtgaaaagttttactgcttccatattt
tcctggaaacaaacatgccacttcgctgctatatctgccagaacttcctatcagcgagca
ctgcacctggccccatggcaagctaatatttatgctgacatcgcaatggcttcagatttt
gtttcctcttttaaagagagtcatggacaagaactaaagccatggcagctaccagagaag
atggctttggggtccttgttgcttgagggtgacaattgtgaattttgggttgcattggct
tgcttatctagcgactgtgcactaaggcagcatgctttaatcaggggactgcaattggat
gtgtctttatctattgcgtgggcatacctagggctgctttatagagaagaaggtgagaag
aaattggcaagacaagcatttgattatgctagaagtattgatccgtcgcttgcattacca
tgggctggtatgtctgctgatagtaacgccagggagtccactccagatgaggcttttgag
agctgcttacaagccgtgcagatactgcctcttgcagagttccaaattggtcttgctaag
cttgcttttctatcagggcacctttcatctccacaggtatatggagccgtgcagcaggca
gtgcagcgtgctcctcaacatcctgagtcccataatttgaatggccttgtttgcgaagca
agatttgagtatcaggctgcaattgcttcttacaggctagcacgctgtgcaatcacccat
agtcctggcacttcctcaaaatcttatcttcgagatatagcagccaaccttgccagagct
ctttgtcacgcaggcaattcctttgaggctgtgcaagaatgcgaagaactgaagaaacaa
ggtatgcttgacatgggaggtttgcaagtatatgctttctctttatggaaacagggtaat
catgacctcgccctctccgtgttgcgagacctggcagcgagtgtttctacattggaacgg
gcctctgtagcttcctctgttagtttcatctgtagattgctgtacagaatttctggaaaa
gattcagcaattactagcattctgaaaatgccaatggatttgtttcttaattctaaaatg
agctttatagtgtctgctatccatgctcttgatcaaaataatcggcttgagtcagttgtt
tcaagcagtcgaaagtttcttaaatctcagacagagattactgaaatgcactatttaatt
gctcttggtaaactaatcaagcctggatcagaacatttccttggatttaatggtggagtg
agtcaccttcgaaaagtacttcacatgtaccctaacagtaatcttataaggaacctactt
ggttatcttttgctatctcgtgaagagtggaaagatgcacatgttgcaaataggtgctgc
cacattgatgctcatggctcttcaaataaggaaggtctaaaatcagcatgtgaaatcatg
ggtgcgggggcggttgcttgctatgtgaatggcaacagtaatctgaggttatctttccca
acgtgcagttgtcagtgcctgaatggacctggagctgtccaagagctgcagaagtactta
catagagaaccatggaatcacaatgcccggtatttgcttattcttaatctcttacagaag
gcacgtgaagagagatttcctagacatatttgtgtcgtacttgaacggttaattgttgtg
gctctttccaatgagttttattcaggaaaagaaatgtatcatcaatatcaaaagtttcag
ctcctgctctgtgcttccgaaattagcttgcagatcgggaatcaagctgatagtatcaac
catgctaaacaggcttcagggcttttagttcctgacagctaccatttttttgttcacttg
cttttatgccgtgcctatgctgccgaaggcaatcgcataaaacttcaggaagagtatatg
aaatgcttggaggttaagacagattatcacataggttgggtctgccttaaaattgtggaa
tctcagtatgaggtgcaaactgatgcaaatatcttagagttgagcttcaaagaatgctcg
aaattgaggatcagatcatgggatatgtggatgggtgtgtttaatttggtgctgggtctg
atgtccatgcggaaccaggattttcttactgctgagcagcttcttgcccaagcttgttca
cttgtcggctatgaaagctgccattgtctatgtcatggtgccatctgtatggaacttgct
aggcagtttagtagtatgagattcttatcacttgctcttgggagtcttaccaaagctcaa
gagaattctccgattcccttgccagttgtctctgtgttgctggcccaagtagtagggagc
cttggtttgaaagcaaagtgggagaaaaaccttcatctggaatggttttcttgggcacca
gaaatgagaccagcagaagtttattttctaatgcatttgcttgcaaaagaatcgaaggga
aaggctgaccatccatcgaatgtggagtcctgtcagagtccagagaaatgggtgattcgg
gccatccatacaaacccttcgtgtatcagatattggaaggctttgcagaagcttctggag
gagtaa
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