Tripterygium wilfordii (thunder duke vine): 120015594
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Entry
120015594 CDS
T07256
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03020
RNA polymerase
twl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120015594
09124 Replication and repair
03420 Nucleotide excision repair
120015594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120015594
03400 DNA repair and recombination proteins [BR:
twl03400
]
120015594
Enzymes [BR:
twl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120015594
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120015594
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120015594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
120015594
NCBI-ProteinID:
XP_038724007
LinkDB
All DBs
Position
14:complement(210774..219649)
Genome browser
AA seq
1855 aa
AA seq
DB search
MDLRFPYSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEEPK
FKQALKIKNRKSRLKKILDACKNKTKCDGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI
DGMKIIVEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCGLLGLDPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSAAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKPIN
LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKRALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKHAQNKDL
EPEPGRTMMESFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKSDFDRVFRYEIDDPSWSPNYMLPEHVTDLQDIKELRDVFNAEVQKLEGDRYQ
LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDFRRPSDLHPVEVVDAVDKLQERLKVVP
GDDRLSMEAQKNATLFFNILLRSTLASKRVLQEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLT
PDVSRTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMTTIIEEDSDFVRSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELEGDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVSKFDENEGFK
TSEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGT
PYHDGMMSPNYALSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPSSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY
NPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSISPTSPSYSPSGPTYSPSSPY
NSGVNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTSKKDERNDKDDMSTP
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgatttccttactctccggcggaggttgccaaagtgcgccgagtccagttc
gggattctcagtcccgatgagatcaggcaaatgtctgtggtccagattgagcatggtgag
acgacagagaggggcaagccaaagcctggtggattaagtgatcctcggctgggtacaatt
gatagaaagatgaagtgtgagacttgtatggcgaacatggccgagtgcccggggcacttt
ggccaccttgagcttgccaagcctatgtttcatattgggtttctaaagactgtgcttagc
atcatgagatgtgtctgcttcaattgctcaaaaattctggcagacgaggaagaacccaag
ttcaagcaagcattaaaaataaagaaccgcaaaagcaggcttaaaaagattcttgatgcc
tgtaagaacaaaactaaatgtgatggaggtgatgaaattgatgtccaaggtcaggacacc
gaagagccagttaaaaagagccgtggtggttgcggcgctcagcagccaaagataagtatt
gatggcatgaagattatagtggagtacaaggctcaaaggaagaaaaacgatgatcaggag
cagcttcctgaacctgtggaaagaaagcaaacgcttactgcagaaagagttctcagtgtt
ctaaagaggataagtgatgaggactgtggattattgggtttagaccctaagtatgcccgt
cctgattggatgattcttcaagtgcttccaattcctccacctcctgtgaggccctctgtg
atgatggacacctcgtcgaggagtgaggatgatttgacccatcagttagccatgattatt
aggcacaatgaaaatcttcgtagacaagagaggaatgggtcagctgcacatatcatatct
gagtttgctcagttgttgcagttccatgtagccacctattttgacaatgagttacctgga
cagcctagggcaacgcagagatctggtagacctattaagtcaatatgtagcaggcttaag
gcaaaagaagggcggattcggggtaacttgatggggaaacgtgtggatttttctgcacga
acagttattacaccagatcccaccattaatattgatgaactgggggtaccatggagtatt
gccctaaatctcacgtatccggaaactgtaactccatataacattgaaagattaaaggag
cttgttgagtatgggccacatcctccgcctggcaaaactggtgccaagtatatcattagg
gatgatgggcagaggcttgatctacgttacttgaagaaaagcagtgatcaccacttagag
cttggttacaaggtagagaggcatttgcaagatggggactttgtcctctttaatcgtcag
ccaagtctccataagatgtctataatgggtcacaggattaagattatgccatattcgacg
ttccgccttaacttgtctgtgacgtcaccatataacgctgattttgatggcgatgaaatg
aatatgcatgttcctcagtcatttgaaaccagggcagaagttttggagctgatgatggta
cctaaatgtatagtatcccctcaagcaaatcggcctgtaatgggaattgtgcaggacacc
cttttaggatgtcgtaaaatcacaaagagagatacctttatagaaaaggatgttttcatg
aacatcttgatgtggtgggaagattttgatgggaaaattcctgcccctgcagttcttaag
ccacgtccactttggactggcaaacaagtttttaatctgattataccgaagccaattaat
ttattgagaacttctgcctggcactcagagtcagaaactgggttcattacacctggggat
actcaagtacggattgaaaaaggggagcttcttgctggaactctttgcaagagggcactt
ggtacttcaactggaagtcttatacacgttatttgggaagaggttggtcctgatgcagct
cgcaaatttttgggacatacacagtggcttgttaattattggcttctgcagaatggtttt
agtatagggatcggagatacaattgctgatgctgcaacgatggagaaaatcaatgaaacc
atatcaaaagccaaaaatgatgtgaaagaactaatcaaacatgctcaaaataaggatttg
gaacctgaacctggtcgaaccatgatggaatcatttgaaaacaaagtgaatcaggtgttg
aatagagctcgtgacgacgctggaagtagtgcacagaagagtttatccgagagcaacaat
ctgaaggctatggtcactgcaggatccaagggaagtttcattaacatatcgcagatgact
gcttgtgtgggacagcagaatgttgagggtaagcgaatcccttatggattcatagatcgg
acattaccacatttcaccaaagatgattatgggccagaaagtcgtggttttgttgagaac
tcatacctacgtggattgactccgcaagagttttttttccacgccatgggtggtagagaa
ggtctaatagacactgctgttaaaacttctgaaactggttatatccagcggcgactagtg
aaagctatggaggatattatggtcaagtatgatgggactgtgaggaactcgttgggggat
gttattcaatttctatacggagaagatggtatggattccgtttggatagagtcgcagaag
ttggattccttaaaaatgaagaaatcagattttgatagggtcttcagatacgagatagat
gatcccagctggagtccaaattacatgttgccagaacatgttacagatttgcaagatatt
aaagaacttcgtgatgtgtttaatgctgaagttcaaaaacttgaaggagataggtaccaa
ctcggaacagagatagcaaccacaggtgacaatacttggccaatgcctgttaacctcaag
aggcttatctggaatgcacagaagactttcaaggttgacttccgaaggccctctgatttg
cacccagtggaagttgtagatgctgttgataaacttcaagagaggttgaaggttgttcct
ggggatgatcggttgagtatggaggctcagaaaaatgcgacccttttcttcaatattctg
cttcggagcacattggctagtaaaagagtgttgcaggagtacaggcttactcgtgaagca
tttgagtgggttattggtgagatagagtcacgatttttacaatccttggtagctcctggg
gaaatgataggttgtgttgctgcacaatctattggggaacctgctactcagatgactctc
aacacctttcactatgctggtgtgagtgcaaaaaatgtaactcttggtgttcccaggttg
agggagatcattaatgttgccaagaagatcaaaacaccttctctgtctgtttacctcaca
cccgatgttagtagaacgaaggagagggccaagaatgtacaatgtgctttggaatacacc
actcttcgaagtgtcacccaagctacagaagtttggtatgacccagatcccatgaccaca
ataattgaagaggatagtgattttgtcaggtcttactatgaaatgccggatgaagaagta
gcacctgaaaagatctctccttggttacttcgtatagagttgaaccgtgaaatgatggta
gataagaagttaagcatggctgatattgctgagaagatcaaccttgaatttgatgatgac
ttgacgtgtattttcaatgacgataatgctgaaaaactgatccttcgcatccgcatcatg
aatgatgaagcccctaagggagagctggaaggtgatgaatcggcagaagatgatgttttc
ctcaagaaaattgagagtaacatgctgacagaaatggctcttagaggcatcccagatatt
aacaaggtgttcattaagcatgggaaagtaagcaagttcgatgagaatgaaggttttaaa
acaagtgaggaatggatgctggatacagaaggcgttaacctcttggctgttatgtgtaat
gagaatgtcgatgcaaggaggacaacgagtaatcacttgattgaaatcattgaagtattg
gggattgaggcagttcgtcggtccttgttggatgaactgagggtcgttatatcttttgat
ggatcttatgtgaattacaggcatctggctatcctatgtgatactatgacctatcgtggc
cacttgatggctattacccgtcatggtatcaatcggaatgatactgggcccatgatgagg
tgctcctttgaagaaaccgtggacattcttcttgatgctgctgtgtatgccgaaactgat
tatttgaggggggttacagaaaatataatgttaggtcagcttgcgccaattggcacggga
gactgctcactttatctcaatgatgaaatgctgaagaatgccattgaacttcagctacca
agctatatggatggcctggattttggcatgacacctgcccgttctcccatctcgggaacc
ccttatcatgatggtatgatgtctccaaattacgcgctgagcccgaatctccgtctatcg
cccatttcagatgctcagttttcaccttatgttggtggaatggcattttcccctacttct
tctccgggctacagcccctcatcaccgggatacagtccctcatcaccgggatacagcccc
acctctcccgggtacagccccacctctcctgggtacagccccacatcgcctggctacagc
ccaacttcacctacatacagccctagttctcctggttatagcccgacgagtcctgcctat
tctcctacaagtccatcctactctccttcgtcacccagctacagccccacgtctcccagt
tacagcccgacatctcccagttacagccccacatctccaagttacagccccacgtctcct
agctacagtccaacttcacctagttatagccccacatctccggtttatagccccacctcc
ccggcatacagccccacctcaccagcatatagtccaacctcgccttcctacagcccgacg
tcgccttcctacagcccgacatcgccttcctacagcccgacgtcgccgtcctacagcccg
acgtcgccttcttatagccctacttcaccagcttatagtcccacttcacctggttacagt
ccaacctcgccaagttacagccctacctcacctagttacagccctacgtcaccgagctac
aatccccagtcagcaaaatatagcccctcgcttgcatattcaccaagcagtccaagattg
tcaccatccagtccttacagtcctacttctccaaattacagcccaacttcaccatcaatt
tctcctacatctccatcgtattctccttcaggtccaacctacagtcccagcagtccatat
aattctggagtgaacccggactacagcccaagctcaccacagtacagtccaagtgctggg
tattcaccaagtgcacctgggtattcgccatcctctaccagtcagtatacacctcaaacg
agcaagaaggacgaaaggaatgataaggatgatatgagtactccttga
DBGET
integrated database retrieval system
