KEGG   PATHWAY: uah04136
Entry
uah04136                    Pathway                                
Name
Autophagy - other - Ursus arctos (brown bear)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
uah04136  Autophagy - other
uah04136

Other DBs
GO: 0006914
Organism
Ursus arctos (brown bear) [GN:uah]
Gene
113241232  ATG4A; cysteine protease ATG4A [KO:K08342] [EC:3.4.22.-]
113241426  ATG9B; autophagy-related protein 9B [KO:K17907]
113242992  ATG4D; cysteine protease ATG4D isoform X2 [KO:K08342] [EC:3.4.22.-]
113244147  ATG2A; autophagy-related protein 2 homolog A isoform X3 [KO:K17906]
113244532  RPTOR; regulatory-associated protein of mTOR isoform X1 [KO:K07204]
113245112  MLST8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
113245638  IGBP1; immunoglobulin-binding protein 1 isoform X2 [KO:K17606]
113246853  BECN2; beclin-2 [KO:K08334]
113249317  ATG4B; cysteine protease ATG4B isoform X2 [KO:K08342] [EC:3.4.22.-]
113250330  ATG16L1; autophagy-related protein 16-1 isoform X2 [KO:K17890]
113250433  ATG9A; autophagy-related protein 9A isoform X1 [KO:K17907]
113251330  ATG3; ubiquitin-like-conjugating enzyme ATG3 isoform X2 [KO:K08343]
113252504  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
113253361  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X2 [KO:K00914] [EC:2.7.1.137]
113253924  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
113254589  ATG4C; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
113257175  ATG7; ubiquitin-like modifier-activating enzyme ATG7 isoform X5 [KO:K08337]
113257592  ATG101; autophagy-related protein 101 [KO:K19730]
113257898  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
113261610  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
113261737  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
113262137  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
113264784  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
113264980  ATG13; autophagy-related protein 13 isoform X3 [KO:K08331]
113265240  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908]
113265398  BECN1; beclin-1 isoform X1 [KO:K08334]
113267295  ATG2B; autophagy-related protein 2 homolog B isoform X1 [KO:K17906]
113267967  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
113270510  MTOR; serine/threonine-protein kinase mTOR [KO:K07203] [EC:2.7.11.1]
113271114  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
113271267  ULK2; serine/threonine-protein kinase ULK2 isoform X1 [KO:K08269] [EC:2.7.11.1]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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