Umezawaea sp. Da 62-37: RM788_05375
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Entry
RM788_05375 CDS
T09853
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume00040
Pentose and glucuronate interconversions
ume01100
Metabolic pathways
ume02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RM788_05375
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RM788_05375
Enzymes [BR:
ume01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RM788_05375
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
WNV87722
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Position
complement(1293657..1294760)
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AA seq
367 aa
AA seq
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MKRSVAWRIPAVMVVLAVATSTSVVLAMSPASAAAGAATGYASQNGGTTGGQGGATVRAT
TGTQIHQALCSRASSSTPIVIEVSGTINHGNTAKVSGSSCETAAGVIELKRISNVTIIGA
GAGAVFDQLGIHIRESRNIIIRNVTVRNVKKSGSPTSNGGDAIGMESDVRNVWVDHVNLL
ASGGEEQGYDGLFDVKDNTQYVTLSYSILRNSGRGGLVGSSESDLSNGFITYHHNLYENI
DSRAPLLRGGTAHMYNNHYVGLAKSGINSRAGAKAKVDNNYFKNSLDVLGTFYTTEAGYW
QVSGNVFDNVTWSAPSSDHKPAGPDVKSTTTVSVPYSFTLDQGNCVPNIVSRTAGANTGL
RESDGNC
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgatcagtcgcatggcggatccccgcggtcatggtcgtgttggccgtcgcgacc
tcgaccagcgtggtgctggcgatgtcaccggcgtcggcggcggccggcgccgcgaccggc
tacgcgtcccagaacggcgggaccaccggcggccagggtggggcaacggttcgggccacg
acgggaacccagatccaccaggccctgtgcagtcgggcgagcagcagcacgccgatcgtc
atcgaggtctcgggcacgatcaaccacggcaacaccgccaaggtttcgggcagcagctgc
gaaaccgccgccggcgtgatcgagctcaagcggatcagcaacgtcaccatcatcggcgcc
ggagccggagccgtcttcgaccagttgggcatccacatccgcgagtcccgcaacatcatc
atccgtaacgtgaccgtccggaacgtcaagaagtctggctctcccacgtccaacggcggc
gacgccatcgggatggagagcgacgtccgcaacgtctgggtcgaccacgtcaaccttctg
gcgtccggtggtgaggagcaaggctacgacggcctgttcgacgtgaaggacaacacccag
tacgtgaccctgtcctacagcatcctgcgcaactccggccgcggcgggctggtcgggtcc
agtgagagcgacctctcgaacgggttcatcacctaccaccacaacctgtacgagaacatc
gactcccgtgcgcctctgctgcggggcggcaccgcccacatgtacaataaccactacgtc
ggcctggccaagtccggcatcaactcgcgcgccggtgccaaggccaaggtggacaacaac
tacttcaagaactcccttgacgtcctcggcaccttctacaccaccgaggccggctactgg
caggtcagcggcaacgtcttcgacaacgtgacgtggtccgccccgagcagcgatcacaag
cccgccggtccggacgtcaagtccaccaccaccgtctccgtgccctacagcttcaccctc
gaccagggcaactgcgtgccgaacatcgtgagccgcacggcgggcgccaacacgggtctg
agggagtcggacggcaactgctag
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