Umezawaea sp. Da 62-37: RM788_05405
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Entry
RM788_05405 CDS
T09853
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume00040
Pentose and glucuronate interconversions
ume01100
Metabolic pathways
ume02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RM788_05405
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RM788_05405
Enzymes [BR:
ume01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RM788_05405
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Phage_cement
NosD
Glyco_hydro_28
Motif
Other DBs
NCBI-ProteinID:
WNV87728
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All DBs
Position
1302731..1303690
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AA seq
319 aa
AA seq
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MSSISRRALLASAAATALATTTRSAWAAPPATADGFAGVNSLGQNGTTGGAGGPVVTVRD
ADAFLDYCDRNEPYVIQVDGVMRISSKQGVRSNKTIIGLGSTAEITGGGLDLYRRQNVII
RNLRFTGADDDAISIQQSSHHVWIDHCDLSGGADGLVDIVRGADYITVSWNHFHDHSKTA
LLGHSDSNAGQDTGKLRVTFHHNFFDGTAQRHPRVRFGEPIHVYNNYFRNNTLYGVASTE
NAGVLVEANYFEDVPHPIYSGYDESGPGRVVERGNVYVRSGTPETLGTVVEPRTYYAYTP
DSAASLPGTVPAGVGVGRI
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcatcagccgacgggcgctactcgcgagcgccgccgcgacagcgctggccacg
accaccaggtccgcgtgggcggcccctcccgccaccgccgacggcttcgccggggtgaac
tcgctcggccagaacggcaccaccggcggcgcgggcggcccggtcgtcacggtgcgggac
gcggacgcgttcctggactactgcgaccgcaacgagccgtacgtcatccaggtcgacggg
gtgatgcggatcagcagcaagcagggcgtgcggtcgaacaagacgatcatcgggctgggg
tccaccgccgagatcaccggcggcggcctcgacctgtaccgcaggcagaacgtgatcatc
cgcaacctccggttcaccggcgcggacgacgacgcgatcagcatccagcagtcctcgcac
cacgtctggatcgaccactgcgacctcagcggcggcgccgacgggctggtcgacatcgtc
cgcggcgccgactacatcaccgtctcgtggaaccacttccacgaccacagcaagaccgcg
ctgctgggccactccgactccaacgcgggccaggacaccggcaagctccgggtgacgttc
caccacaacttcttcgacggcaccgcccaacgacacccgagggtccgcttcggcgagccg
atccacgtctacaacaactacttccgcaacaacaccctctacggcgtcgcgtcgaccgag
aacgcgggagtcctggtcgaggccaactacttcgaggacgtcccccacccgatctactcg
ggctacgacgagagcgggccggggcgcgtggtcgagcgcggcaacgtctacgtccgctcc
ggcacccccgagacgctcggcaccgtggtggagccgcgcacctactacgcctacaccccc
gacagcgccgccagcctgcccggcaccgttccggcgggcgtcggcgtcggccggatctga
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