Undibacterium piscinae: EJG51_001205
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Entry
EJG51_001205 CDS
T06644
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
upi
Undibacterium piscinae
Pathway
upi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
upi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJG51_001205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upi03400
]
EJG51_001205 (mfd)
Enzymes [BR:
upi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJG51_001205 (mfd)
DNA repair and recombination proteins [BR:
upi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJG51_001205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QJQ04694
UniProt:
A0A6M4A0I0
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All DBs
Position
complement(249925..253344)
Genome browser
AA seq
1139 aa
AA seq
DB search
MSFDLVKALPKPGNRFALPNLHGSADAYVLAQTAVALKAQQRMLTVFVANPGDAQRLLDE
IPWFAEGLRCHLLPDWETLPYDAFSPHQDLVSERLATLHEISGGNCDVLLVPATTALVRM
APPSFLAAYTFFFKQGETLNEARLKSQLTLAGYAHVSQVMSPGEYSVRGGLIDIFPMGSV
LPYRLDLFGDSIETIRTFDADTQRSLYPVREVRLLPGREFPMDEAARTAFRSRWREQFEG
DPSRSMIYKDISGGIPSAGIEYYLPLFFDETATLFDYLPDQTHFVLIGDIDEAIQRFWAD
TRSRYQFLKSDRQRPVLAPEVLFLRDEDFFGALKSQARWVLSSGGAPSEISSLLPDIAVN
RRADDPLANLRSFLLQSKQRVLICAETLGRRETLQQYFNDYAIPLAICEGYTDFATSDAK
LMLGVAPLHSGFVLDELAFVTETELYAGSGKRIGRKKQEAVTQVEHMVRDLSELKIGDPV
VHSNHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPDDAPLH
ALGSGNWEKAKRKAAQQIRDTAAELLNLYARRALRQGHAFEFSHKDYEAFADSFGFEETA
DQAAAITAVIGDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAE
QHAQTFADRFANWPVKIGELSRFRTGKEITLAMKGMGDGTLDIVIGTHKLLSGDIKFSRL
GLVIIDEEHRFGVRQKEILKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKR
LAIKTFVRSENDSVIREACLRELKRGGQVYFLHNEVDTIENRKAMLEALIPEARVAVGHG
QMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRV
GRSHHQAYAYLLVADVQGLAKQANRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDNQ
SGEMHEIGFQMYSDMLSEAVRSLKNGKEPDLAAPLSTMTEINLHIPALLPNDFCGDVHER
LSIYKRLANCSKAGAIDDMQEEMIDRFGKLPDPVKSLLETHRLRVAAKPLGIIKIDAHNE
AISLQFEPQPPIDAMRIIELVQKNKNVKLNGQDKLRITANMPDLAARVAQIKSTMKALQ
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatctcgtcaaagctctccctaagcccggcaatcgttttgctctccctaac
ctgcacggctctgccgacgcctatgtgctggcacaaactgccgtcgctttaaaggcgcaa
cagcgcatgctgacggtgtttgtcgccaaccccggcgacgcccagcgtctgctcgacgaa
atcccctggtttgccgaaggcttgcgctgtcacttgctgccggattgggaaaccctgcct
tacgatgcgttttcaccgcatcaggatctggtctccgaacgcctggcaaccctgcacgag
atcagcggcggcaactgcgacgtgttactggtgccggccaccaccgctctggtgcggatg
gcgccgccctcgtttttagccgcctataccttctttttcaagcagggcgaaacactcaat
gaagcgcgcctgaaatcgcaactgaccttggccggttacgcccacgtatcacaagtaatg
tcgcccggcgagtactcggtacgcggcggcctgatcgatattttccccatgggttcggtg
ctgccgtatcgcctcgatttgtttggcgacagcatagaaaccatacgcacctttgatgcc
gacacccagcgttcgctgtatccggtacgtgaagtgcgtttgctgccgggccgcgaattc
cctatggacgaggcggctcgtaccgccttccgtagccgctggcgcgagcagtttgaaggc
gatccttcacgctccatgatctacaaggacatcagcggcggcatcccgtcggccgggata
gaatattatctgcctctgttttttgacgaaaccgcgaccctgttcgactacctgccggat
cagacccatttcgtcctgatcggtgacatcgatgaagcgatacaacgcttctgggctgat
acccgctcgcgctaccaatttttaaagtcggaccggcagcggccggtgctggcaccggaa
gtcctgtttctgcgtgacgaagattttttcggcgcattaaaatctcaggctcgctgggta
ttgagcagtggcggcgcaccctccgaaatctctagcttgctgccggatatcgccgtcaac
cgccgcgccgatgacccgctggccaatttgcgctcgtttttactgcagagtaaacagcgc
gtactgatttgcgcagaaaccctgggccggcgcgaaacgctgcaacagtatttcaacgat
tacgcgattccactcgccatttgcgaaggttataccgacttcgccacctcagacgccaaa
ctaatgctgggcgttgcgcctttgcatagcggcttcgtgctcgatgagctggcctttgtc
accgaaactgaactgtatgcaggctcaggcaaacgcataggccgtaaaaagcaagaagcc
gtaacccaggtcgagcacatggtgcgcgatttgtccgaactgaaaatcggcgacccggtg
gtgcacagtaatcacggcataggccgctacatgggtctggtcagcatggatctgggcgaa
ggcgaaaccgagttcctgcatctggaatacgccaaggaaaccaagctctacgtgccggtc
tcgcaattgcacgtgatctcgcgctattccggcgcatcgcccgatgacgcgcctttgcac
gcattaggttcgggcaattgggaaaaagccaaacgcaaggccgcccaacaaatccgcgat
accgctgccgaactgcttaacctgtacgcccgccgcgccttgcgccagggtcacgcgttt
gagttttcacacaaagattacgaagccttcgccgatagttttggctttgaggaaaccgcc
gatcaggccgctgccattaccgccgtgatcggggatatgacgtccggcaagcctatggac
aggctgatctgcggtgacgtcggcttcggcaagaccgaggtcgccttacgcgccgccttt
gtcgccgtgatgggcggcaagcaggtggcgattctggcaccgaccacgctactggccgaa
cagcatgcccagacctttgccgaccgttttgccaactggccggtaaagataggtgagctt
tcgcgcttccgcaccggcaaagaaattacgctggccatgaaaggcatgggcgacggcacg
ctcgatatcgtgattggcacccacaaattactgtcgggcgacatcaaattttcgcgactg
ggtctggtgatcatcgatgaagaacaccgtttcggggtacgccaaaaagaaatattgaaa
tcccttcgcgccgaagtcgatgtactcacgctcaccgcgacacctatcccgcgcacgctg
ggcatggcactggaaggtctgcgcgacttctccatcatcgccaccgccccgcaaaaacgt
ctggcgatcaaaacgtttgtgcgcagcgaaaacgattcggtaatccgcgaagcctgcctg
cgcgaactcaaacgcggtggtcaggtgtatttcctgcacaatgaagtcgacaccatagaa
aaccgcaaagccatgctcgaagcgctgatccccgaagcgcgggtggcggtcggccatggc
cagatgcatgaacgcgatctggaaaaagtcatgcgcgattttgtcgcgcagcgctacaac
attttgctctgcaccacgattatcgaaaccggtatcgacgtccctaccgccaacaccatc
atcatgcacagggccgataaattcggtctggcgcaattgcatcagttgcgcggccgcgtc
ggtcgctcacatcatcaggcctatgcgtatttgctggtggccgatgtgcaaggcctggcc
aaacaagccaatcgccgcctggaggcgattcagcagatggaagaactcggcagtggtttc
tacctggcgatgcacgatctggaaatacgcggcgccggtgaagtgctgggcgataatcaa
tcgggcgaaatgcacgagatcggcttccagatgtattccgatatgctcagcgaagcggta
cgctcgctgaaaaacggcaaggaaccggatctggcggcaccactgtcgaccatgaccgaa
atcaatctgcacatccctgcgctgttgccgaacgacttctgcggcgacgtgcatgagcgt
ctgtcgatctacaaacgcctggccaattgcagcaaggccggcgctatcgacgatatgcag
gaagagatgatagaccgcttcggcaaactgcctgatccggtcaaatctttactggaaacg
caccgcttgcgggttgccgccaaaccgctgggcatcatcaagatcgatgcccacaacgaa
gcgatcagcctgcagttcgaaccgcaaccgcctatcgatgcgatgcgcatcatagagctg
gtgcaaaagaacaagaacgtcaaactcaacggccaggataaattgcgcatcactgcgaat
atgccggatctggcggcgcgcgtggcacaaatcaagagcaccatgaaagccctgcaatag
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integrated database retrieval system
