Undibacterium parvum: EJN92_11480
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Entry
EJN92_11480 CDS
T05754
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
upv
Undibacterium parvum
Pathway
upv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EJN92_11480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
upv03021
]
EJN92_11480 (rpoB)
03400 DNA repair and recombination proteins [BR:
upv03400
]
EJN92_11480 (rpoB)
Enzymes [BR:
upv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EJN92_11480 (rpoB)
Transcription machinery [BR:
upv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EJN92_11480 (rpoB)
DNA repair and recombination proteins [BR:
upv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EJN92_11480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AZP12569
UniProt:
A0A3Q9BR16
LinkDB
All DBs
Position
2625453..2629559
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYHSFLQQDNAPSSRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLRAIGMSNEQILANFFVFDNFNLHSD
GAEMEFVAERLRGEVARFDIVDKTGKVIVAKDKRINSKHVREVEAAGIKHISVPEDYLLG
RVLAKNIVDAETGEVVANANDELTEELLARLRDAKISDIQTLYTNDLDQGSYISQTLRAD
DTADKMAARVAIYRMMRPGEPPTEDSVESLFNGLFYNEDRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
VDSKITTQIDYLSAIEEGRYIIAQANASIDNSGSLSDELVSARQAGETILVSPERVQYMD
VATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT
TVQALRGGKVDYIDAGRIVIRVNDAEATAGEVGVDIYNLIKYTRSNQNTNINQRPIVKIG
DRVTKGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDEAGIVYVGAEVTAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQMRIVEGDAFERLERMLTGKVANGGPAKLAKGSSVTKEYLADLDKYHWFDIR
PADDDTAKSLEAIKDSIAEKRHQFDLAFEEKRTKLTQGDELPPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGIRIGEMLKAKVKIEELRGFLKQIYNESGKVEDIDGLSDDEILTLTGNLKNGVPFAT
PVFDGADEAEIRRMLDLAYPDEIAKQLGMTPSKNQVTLYDGRTGESFERNVTVGYMHVLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIEAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaagcgaattcgtaaatcttttgcgaaacgcgctaac
gttcacaacgttccgttcctgctggcgacccagctcgagtcatatcatagttttttgcag
caagacaatgcaccgtcttcacgcaaaaatgaaggcttgcagtctgccttcacttcgata
tttccgatcgtgtcgcataatgggttcgctcgcctcgaattcctatcctacgttttaggt
gaccctgcatttgatgtcaaggaatgtcaattgcgcgggcttacttttgcgtcaccttta
cgtgcaaaggtacgtctggtgattctggataaagaatcgccaactaaacctgtcgttaaa
gaaatgaaagaacaagaagtttacatgggtgaattgccactcatgacgacgactggttca
ttcgtgattaacggtacagagcgcgttattgtgtctcagttgcaccgctcgcctggtgtg
ttctttgagcacgaccgcggcaaaacacactcatccggtaaattgctgttttcagcaaga
attatcccttaccgtggttcgtggttggattttgaattcgatccaaaagatatcttgttc
ttccgtatcgacagacgtcgtaagatgcctgtaacgatattgttgcgtgctataggcatg
agcaatgaacagatcttagcgaatttctttgtttttgataatttcaatctgcacagcgat
ggcgccgagatggaatttgttgctgagcgtctgcgcggtgaagtggcccgtttcgacatc
gtcgacaaaacaggaaaagtgatcgttgctaaagacaagcgtatcaactccaagcatgtg
cgtgaagttgaagctgctggtatcaagcatatttcggttcctgaagattatttgcttggt
cgcgttttggcgaaaaacatcgttgacgcagaaactggcgaagtggttgccaatgcgaat
gacgagttaacagaagagttgttggcgcgtctgcgcgatgcaaaaatcagcgatattcaa
actctgtataccaatgatttggatcagggttcgtatatttctcagactctgcgcgctgat
gataccgccgataagatggcagcacgtgtcgctatctatcgcatgatgcgtccaggcgaa
ccgcctacagaagattcagtagagtctctgtttaacggcttgttctacaacgaagatcgt
tacgatttgtcagctgtcggtcgtatgaagttcaaccgccgtattggtcgtgatgaactg
actggcgcgatgactttgtccaatgaagacgtgttggctgtgattaagatcttggttgag
ttgcgcaatggtcgcggtgaagtcgatgatattgatcacttaggtaatcgtcgtgtacgt
tgcgtcggtgaattggctgagaatcaattccgtgccggtctggttcgcgtagagcgcgca
gtgaaagagcgtttgggtcaagctgaagcggataatttgatgccgcatgatttgatcaat
tccaagcctatctctgccgccattcgtgagttcttcggttcttcacagttgtcgcagttt
atggatcaaactaatcctttgtcagaaattacgcataagcgtcgtatttctgctttggga
cctggtggtttgacacgtgaacgtgctggttttgaagtgcgtgacgtacatccaactcac
tacggtcgagtttgcccgattgagacaccagagggaccaaacattggtttgatcaactct
ttggctttgtatgcacgtttgaacgaatacggtttcctggaaacgccataccgcaaggtt
gtcgacagcaagatcacgacccagatcgattatttgtctgcaatcgaagaaggtcgctac
atcatcgctcaggcgaatgcgtctatcgacaatagcggtagtctgtcagatgaattggtg
tctgcacgtcaagctggtgaaaccattttggtctctcctgaacgcgtacagtacatggac
gttgcgacaggtcaggtggtctcggttgcagcatccttgattcctttcctagaacacgat
gatgcgaaccgtgctttgatgggtgccaacatgcagcgtcaagctgtgccatgtttgcgt
ccggaaaaagccctggtcggtacaggtatcgaacgtacagttgcggtcgattctggtact
acagtacaagctttgcgtggtggtaaagttgattacatcgatgcgggtcgtatcgttatt
cgcgtcaatgatgcggaagcgacggcaggcgaagtcggtgttgatatctacaacctgatt
aagtacacacgttctaaccagaacaccaacatcaatcaacgtcctatcgttaagatcggt
gatcgcgttaccaaaggtgacgtcttggcggatggtgcatcgacagatttgggtgaattg
gccttgggtcaaaacatgctggtcgcgtttatgccttggaatggttataacttcgaagat
tcgattttgatctccgaaaaagtggtggctgatgatcgttacacttccattcatattgaa
gagttgtcggtcgttgcgcgtgatactaagcttggtgccgaagaaatcactcgcgatatc
tcgaatctggctgagaatcaattagctcgtctggatgaagcaggtatcgtctacgtcggt
gcggaagtcactgccggtgatactctggttggtaaggtaacgccaaaaggcgaaactcaa
ctgacgccagaagaaaaactgctgcgtgcgattttcggtgagaaagcatctgacgttaaa
gatacgtccctgcgcgtgccttccggcatggtcggtactgtgatcgacgttcaagtgttt
acccgtgaaggtatacaacgtgacaagcgtgcgcaacagatcattgatgatgaactgaag
cgctatcgtctggatttaaacgatcagatgcgtattgttgaaggcgatgcatttgagcgt
cttgagcgtatgttgactggcaaggtcgctaacggtggtccagcgaaattggctaaaggt
agtagcgttaccaaagaatatctggctgatctggataaataccattggttcgatattcgt
cctgccgatgatgacactgcaaaatctttggaagccattaaggattccatcgctgagaag
cgtcatcaatttgatctagcgtttgaagaaaaacgcaccaagttgacgcaaggcgatgaa
ttgcctccaggcgtacaaaaaatggtcaaggtttacctggctgttaaacgtcgcttgcaa
cctggtgacaaaatggcgggtcgtcacggtaacaagggtgtggtttcacgcattgttccg
attgaagatatgccttacatggctgacggtactccagctgacatcgtactgaacccattg
ggtgttccttcacggatgaacgttggtcaggtcttggaagtacatttgggctgggctgct
aaaggtttgggcatacgtatcggcgaaatgctgaaagccaaagtcaagatcgaagagtta
cgtggcttcctgaaacagatttataacgaatctggcaaagttgaagatatcgacggtttg
tctgatgatgaaattttgactttgacaggcaatttgaaaaacggtgtgccatttgccact
ccagttttcgatggtgctgatgaagctgaaattcgccgcatgctcgatctggcttaccca
gatgaaattgctaagcaactcggtatgacgccttcgaagaatcaagtcactttgtatgat
ggccgtactggtgaatctttcgaacgtaatgtcactgtcggttacatgcacgttctgaaa
ttgcaccatctggttgatgacaagatgcatgcacgttctaccggtccttactctctggtt
acgcaacaaccattgggcggtaaagcgcagttcggtggtcagcgtttcggtgagatggaa
gtttgggcactggaagcatacggcgcgtcttatgtcttgcaagagatgttgaccgtgaaa
tcagatgacgtaaatggacgtactaaagtgtacgaaaatctggttaaaggtgatcacgtg
attgaagccggtatgccagaatcctttaacgttttggttaaagaaattcgttctctgggt
atcgatatcgatctcgaccgtaactga
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integrated database retrieval system
