Usitatibacter rugosus: DSM104443_03088
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Entry
DSM104443_03088 CDS
T06990
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM104443_03088 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_03088 (ligD_2)
Enzymes [BR:
uru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM104443_03088 (ligD_2)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM104443_03088 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QJR12005
UniProt:
A0A6M4GYA6
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All DBs
Position
3303777..3306509
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AA seq
910 aa
AA seq
DB search
MAKDSLREYSAKRTFTATPEPPAAIAEGRGGPLLFVVQQHRASRLHYDFRLECDGVLKSW
AVPKGPSLDTNEKRLAVQTEDHPFGYASFEGVIPPGQYGAGEVIVWDCGVYSPDEGATWY
HDRAGAEREVLDGLAKGKLSFTLRGEKLKGSFALVKTKEAKQWLLIKHRDRFVTADDVTQ
QDRSVLSGIAVSEMKTVPAGKRLPAVQLVPNGEVVPMPAVAKLAPMLAESADKAFNKPDW
MWEPKLDGYRVLAFIGEDGVRLRSRRGIDYAANFPALAAELGKQQAVNGMVLDGEIVAFD
SNARPSFGALQERAQLKTASEIAAADRDMPVVFFAFDMPWFAGIDLRAVPYRERRRYLAQ
CILPSPRVQLVHAVDDGIALNEAAISAGFEGVIGKRKESRYESGKRSQSWLKVKPTQTGD
FVIGGYTKGKGSRGELGALIVGYWEGKKLHFASGVGSGFDDRTLAAVLARIKPLERKTMP
FAEKPELMNGGVPIWVEPTNVAEVEFQSWTDDGHLRAPIFLRLRDDLDAKKVKKPEFRST
PIKGSDHVIEPTIKWSDPFIGDVVKQLEEKKKDLVLVVGKDRIKVTNLDRVYWPEDKALK
QPALTKRDLLRYFARVSPFILPHLRDRPLTMIRMPDGIRGQRFFQKHWEQEKPAFVEKIR
VFSGSKDEQHDYLLCNNLPTLLWLAQSGTLEFHVWHSRSNPGLDAKMQASDFDSSLEALE
SSVLNFPDYVVFDLDPYIYSGQESKGAEPELNTVAFEKGKEVAFWLKELLNTMSLNPIVK
TSGKTGLHIFVPIKRTIDFDAARHVSELVGRHLMKQHPKDITLEWSIPKRTGKIFMDYNM
NVRGKTLNVAYSPRGEPGAPVSMPLTWEELANAHPLDFRLTNAMDRLVETGDRWHDALTI
KQSLERALKK
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagacagcctgcgcgaatactccgcgaagcgcacgttcaccgcaacgcccgag
ccgcccgccgccatcgccgagggccgcggcggtccgctgctcttcgtcgtccagcaacac
cgagcctcacggctgcactacgacttccgcctcgaatgcgacggcgtcctcaagtcctgg
gcggtccccaaggggccgtctctggacactaacgagaagcgcctcgcggtgcaaacagag
gatcacccctttggttacgcttccttcgagggcgtgatccccccggggcaatacggggcc
ggcgaggtgatcgtgtgggactgcggcgtgtactcgcccgacgagggcgccacctggtac
cacgaccgcgcgggcgccgagcgcgaagtgctcgacggcctggcgaaggggaagctctcc
ttcacgctgcgcggcgaaaagctgaaaggctccttcgcactggtgaagacgaaggaagcg
aagcagtggctgttgatcaagcatcgcgaccgcttcgtgaccgcggacgacgtgacgcag
caggaccgctcggtgctctccggcatcgcggtatccgagatgaagacggtgcccgcgggc
aagaggcttcccgccgtgcagctcgttcccaatggcgaggtggtgccgatgcctgcggtg
gcgaagctggcccccatgctggcggagtcggccgacaaggccttcaacaagcccgactgg
atgtgggagccaaagctggacggctatcgcgtgctcgcgttcatcggcgaggatggcgtg
agactgcgctcgcgccgcgggatcgactatgccgcgaattttcccgcgcttgccgcggag
ctcggcaagcaacaggcggtcaacggcatggtgctcgacggcgagatcgtggccttcgat
tccaacgcacgcccctccttcggcgcactgcaggaacgcgcgcagctgaagaccgcgagc
gagatcgccgccgcggaccgcgacatgccggtcgtgttcttcgcattcgacatgccctgg
ttcgccggcatcgaccttcgtgccgtgccgtatcgcgagcggcgccgctatctcgcgcag
tgcatcctgccctcgccgcgcgtgcagctcgtgcatgcggtggacgatggcatcgcgctg
aacgaggcggcgatctccgcgggcttcgagggcgtgatcggcaagcggaaggagagccgc
tacgaatcgggcaagcgctcgcagtcgtggctgaaggtgaagcccacgcagaccggcgac
ttcgtgatcggcggctacaccaaggggaagggctcgcggggcgagctgggcgccctcatc
gtcggctactgggaaggaaagaagctgcatttcgcttccggcgtcggctccggcttcgac
gaccgcacgctcgccgccgtgctcgcgcgcatcaagcccctcgagcgcaagacgatgccc
ttcgccgagaagccggaattgatgaatggcggcgttccgatctgggtggagcccacgaac
gtcgccgaagtggagttccagagctggaccgacgacggccacctgcgcgcgcccatcttc
cttcgcctgcgcgacgacctcgacgcgaagaaggtcaagaagcccgagttcaggtccacc
ccaataaaggggtcagaccacgttattgaaccaacaataaagtggtctgacccctttatt
ggggacgtggtgaaacaactggaggagaagaagaaagacctcgtgctcgtggtcggcaag
gaccgcatcaaggtcacgaacctcgaccgcgtgtactggcccgaggacaaggcgttgaag
cagccggcgctgacgaagcgggatctgctgagatacttcgcgcgcgtctcgccgttcatc
ctgccgcacctgagggaccggccgctcacgatgatccgcatgcccgacggcatccgcggc
cagcggttcttccagaagcattgggagcaggagaagcccgcgttcgtggagaagatccgc
gtgttctcgggcagcaaggacgaacagcacgattacctcctgtgcaacaacctgcccacg
ctgctgtggctcgcgcagtcgggcacgctcgaattccacgtgtggcattcgcgctccaat
cccggcctggacgcgaagatgcaggcctccgatttcgattcgtcgctcgaagcgctcgag
agctccgtcctcaactttcccgactacgtcgtcttcgacctcgatccctacatctactcg
ggccaggaatcgaagggcgcggagccggagctgaacaccgtcgcgttcgagaagggcaag
gaggtcgcgttctggctgaaggagctgctgaacacgatgtcgctgaatcccatcgtgaag
acttcgggcaagacggggctccacatcttcgtgcccatcaagcggacgatcgacttcgat
gccgcgcgccacgtctccgagctcgtgggccggcacctgatgaagcagcacccgaaggac
atcacgctcgagtggagcatcccgaagcgcaccgggaagatcttcatggactacaacatg
aacgtccgcggcaagacgctcaacgtcgcgtattccccgcgcggcgagccgggtgcgccg
gtttcgatgccgctcacgtgggaagagctcgccaatgcgcacccgctcgacttccggctc
accaatgcgatggatcgcctggtcgaaaccggggatcgctggcacgacgcgctcacgatc
aagcagagcctggagcgggcgctcaagaagtag
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