Ustilaginoidea virens: 66066499
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Entry
66066499 CDS
T11247
Symbol
UV8b_05722
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
uvi Ustilaginoidea virens
Pathway
uvi03020
RNA polymerase
uvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
66066499 (UV8b_05722)
09124 Replication and repair
03420 Nucleotide excision repair
66066499 (UV8b_05722)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uvi03021
]
66066499 (UV8b_05722)
03400 DNA repair and recombination proteins [BR:
uvi03400
]
66066499 (UV8b_05722)
Enzymes [BR:
uvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
66066499 (UV8b_05722)
Transcription machinery [BR:
uvi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
66066499 (UV8b_05722)
DNA repair and recombination proteins [BR:
uvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
66066499 (UV8b_05722)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LRR_6
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
66066499
NCBI-ProteinID:
XP_042999152
UniProt:
A0A8E5HUH2
LinkDB
All DBs
Position
4:complement(join(4651892..4651919,4651999..4656905,4657031..4657387))
Genome browser
AA seq
1763 aa
AA seq
DB search
MANYHPPFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLL
GSIDRGFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTS
DPEFVTAISTRDAKLRFNRVWAVCKKKRRCENEDRSEKNDEDFAPGMKPVVNNHGGCGNV
QPQVRQAALQLKAAFDVAQEDGPKRRETVPITPEMAHGILRRISEEDLRHMGLNSDYARP
EWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHI
ARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRA
DGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF
RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSL
AGAYKLCRRDTFIDKDMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLLSMVIPKEISL
HSPESAGGGDNADMPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMA
FLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEA
LPGMNVRATFENKVSMALNSARDQAGTTTQNSLKDSNNAVTMADSGSKGSSINISQMTAL
VGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGL
IDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDGLDAMCIEKQKLG
TLKMSDAAFESKYRLDLANPPDWFRKDYEYGNELAGDKESMDLLDAEWDALLDDRRTVRA
INRGKMGEEMMQLPLNVGRIIESAKRVFNVRATDRSNLRPTDVIPRVRSLLGEIKIVRGQ
DPISVEADTNATILFKALIRSRLAFKEIVKVHRLNRLAFDHVLGELQNRWDRSFVSPGEM
VGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKTPSMAVYLDTH
LGTQEQAKKLRSMVEYTNLRSITSVTEIYYDPDIQGTNIAEDVDMVESYFLIPDDAQDTT
DQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRA
ENDKDDDDEKRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTMGTRLVIDSDGSELARK
GDDRCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVL
AFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATG
ELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVISDNSRMGLMPGMPVKEGEAEGA
ATPYDTGSPMSNDSGYMSMSSPAAGNFSPIQGAGSETPAGFGTEYGGPSGFGSGIGSMSP
YNLRGAAAASPFSTSPTSPFAAMGGYSPTSPNAGYSPSSPLLDGGVGRYATSPSFSPSSP
SFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNY
SPASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA
FSPRTPGPGNSGNQYSPNSPSND
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattaccaccctcccttctcgagcgctccgctcaaaacggtcgaggagattcag
tttggcttaatgtcccccgaagagatcaaaaacatgagcgtttgccacattctgtacccc
gagacgatggacgaaagccgcacaaagccgcgcgacggcggtctcaacgaccccctcctg
ggctccatcgatcgtggtttcaagtgcaagacctgtacgcaggccatgagtgactgtcct
ggccactttggtcacatcgagctggccaaacctgtgtatcatcctggtttcatcaagaag
gtcaagaagatcctggagattgtctgccacaactgcagcaaggtgctggccgatactagt
gatcccgagtttgttacagccatcagcactcgagacgccaagcttcgcttcaatcgggtt
tgggcggtttgcaagaagaagcgaaggtgcgagaacgaggatcgcagcgagaagaatgat
gaggatttcgcccccggcatgaaaccggtggtcaacaaccatggcggctgcggcaacgtg
cagccgcaggttcggcaagccgctctgcagctcaaggccgcgtttgacgtcgcgcaagag
gacggcccgaagcgacgcgagacggtgcccatcacccccgaaatggctcacggcatcttg
agaaggatttccgaggaggatctgcgccacatgggcctcaactcggattacgcccgcccg
gagtggatgatcctcacggtgcttcccgtgccgcctcccccggtccgccccagcatttcc
atggacggcacgggcaccggcatgcgaaacgaggacgacttgacgtacaagctcggcgac
atcatccgcgccaacggcaacgtgaagcaggcgatccgggagggctccccccagcacatt
gcccgggatttcgaggagctgctccagtaccacgtggcgacgtacatggacaacgacatt
gcgggtcagccgcgcgctctgcaaaagagcggccgtcccgtcaaggccatccgggcccgg
ttaaagggcaaggaaggccggctgaggggcaacctgatggggaagcgggtcgacttctcg
gcccgcaccgtcatcacgggcgacgcgaacctgtcgctgcacgaggtcggcgtgccgcgc
agcatcgccaggacgctgacgtaccccgaaaccgtcacgccgtacaacattggcaagctg
caccagctggtcgagaacgggcccaacgagcacccgggtgccaagtacgtcatccgggcc
gacggcacgcgcatcgacctgaggcaccaccggcgcgccgcccagatctcgctcgagtac
ggctggaaggtggagcggcacctgatggacggcgactacatcatcttcaaccggcagccc
tcgctgcacaaggagtccatgatgggccaccgcgtccgcgtcatgccgtactcgacgttt
cgcctgaacctgtcggtcacgtcgccctacaacgccgactttgacggagacgagatgaac
ctgcacgtgccccagagcgaggagacgcgcgccgaggtcaaggagctgtgcctcgtgccc
aacaacattgtgtcgccgcaaaagaacggccccctgatgggcatcgtgcaggactcgctc
gccggcgcgtacaagctgtgccggcgggacaccttcatcgacaaggacatggtcatgaac
atgatgctctgggtccccaactgggacggcgtcatcccgcagcccgccatcctgaagccg
cgccctcgctggaccgggaagcagctcctcagcatggtcatccccaaggagatcagcctg
cactcccccgagtccgccggcggcggcgacaacgccgacatgccgctcaaggacacgggc
ctcctgatccagagcggggagctgctgtacggcctcttgaagaagaagaacattggctcg
gccgccggcggcatcgtgcacctgagctacaacgagctgggccccgagggcgccatggcc
ttcctcaacggcgtccagcaggtcgtcacgtactggctgctcaacaacggccacagcatc
ggcatcggcgacaccgtcccggacaagcagaccatcgaaaaggtccaggtccacatcgac
acgcaaaaggccgaggtggcgaggctgaccgcccaggccacggccaacgagctcgaggcc
ctcccgggcatgaacgtccgggcgacgtttgagaacaaggtctcgatggcgctcaactcg
gcgcgcgaccaggccggcacgacgacgcagaacagcctcaaggactccaacaacgccgtc
accatggccgattccgggtccaagggctcgtccatcaacatctcccagatgacggccctg
gtcggccagcagattgtcgagggcaagcgcatcccctttggcttcaaataccggacgctg
ccgcacttcaccaaggacgactactcgcccgaggcccgcggcttcgtcgagaactcgtac
ctgcgcggcctgacgccgaccgagttcttcttccacgccatggccggtcgcgagggcctc
atcgacacggccgtcaagacggccgagacgggctacatccagcggcggctggtcaaggcg
ctcgaggacctgagcgcgcggtacgacgggacggtgcgcaactcgctcggcgacattgtc
cagttcctctacggcgaggacggcctggacgccatgtgcatcgagaagcagaagctgggc
accctcaagatgtccgacgccgcgttcgagagcaagtaccggctcgacctggccaacccc
ccggactggttcaggaaggactacgagtacggcaacgagctggccggcgacaaggagtcg
atggacctgctcgacgccgagtgggacgccctgctggacgaccgccgcaccgtccgcgcc
atcaaccgcggcaagatgggggaggagatgatgcagctgcccctcaacgtcggccgcatc
atcgagagcgccaagcgcgtcttcaacgtccgcgcgacggaccgcagcaacctgcgcccc
accgacgtgatccccagggtgcggagcctgctgggcgagatcaagattgtccgcggccag
gaccccatctcggtcgaggccgacaccaacgccacgatcctgttcaaggcgctgatccgc
tcgcggctcgccttcaaggagattgtcaaggtccaccgcctgaacaggctggcctttgac
cacgtgctgggcgagctgcagaaccgctgggaccgctcctttgtcagccccggcgagatg
gtcggcgtcctcgccgcgcagtccatcggcgagcccgccacgcagatgacgctcaacacg
ttccactttgccggcgtctcgtccaagaacgtcaccctcggcgtgccccggctcaaggag
atcctcaacctggccaaggacatcaagacgcccagcatggccgtgtacctcgacacgcac
ctgggcacgcaggagcaggccaagaagctgcggagcatggtcgagtacaccaacctgcgc
tccatcacgtccgtcaccgagatctactacgacccggacatccagggcaccaacattgcc
gaggacgtcgacatggtcgagtcgtactttctgatccccgacgacgcccaggacacgacg
gaccagcagtcccggtggctcctccgcatcaccctcgaccggcagaagctcctcgacaag
gagatcaggatcgacgacgtggcccagcgcatcaaggaggagtaccccaacgacctggcc
gtcatcttcagcgacaacaacgcggacgagcaggtcatccgcatccggaccatccgcgcc
gagaacgacaaggacgacgacgacgagaagaggatcgaggacgacgtcatgctgaagcgg
ctcgaggcccacctgctcgacacgctgaccctccgaggcgtgcccggcgtcgagcgggcc
tttctgaccatgggcacgcgcctggtgatcgactcggacgggtccgagctcgcgcgcaag
ggcgacgacaggtgcacgcagtggtacctggacacgtcgggctcggcgctccgcgacgtc
ctggccgtcgacggcgtggaccccacccgcacctacaccaacgacctctggcagattgtc
gaggtctttggcatcgaggccgcgcggtccgcgctggtcaaggagctgaccaacgtgctg
gcctttgacggctcctacgtcaaccaccgccacatcgccctgctcgtcgacgtcatgacg
taccggggcagcatctcggccgtcacccggcacggcatcaaccgcgccgacacgggggcc
ctgatgcgctgctccttcgaggagacggtcgagatcctcctcgaggccgcggccaccggg
gagcttgacgactgccgcggcatctcggaaaacgtcatgctgggccagctggcgcccatg
ggcaccggcaactttgacgtcttcctcgaccccaagatgctggagacggtcatctcggac
aactcgcgcatgggcctcatgcccggcatgccggtcaaggagggcgaggccgaaggggcg
gcgacgccctacgacacggggtcccccatgtccaacgactcgggctacatgagcatgagc
tcgccggccgccggcaacttctccccgatccagggcgcggggtccgagacgcccgccggc
ttcggcaccgagtacggcgggccgtcgggcttcggcagcggcatcggctccatgagcccg
tacaacctgcgcggcgcggcggccgccagcccctttagcacgtcgcccacgtcgcccttt
gccgccatgggcggctactcccccacgtcgcccaacgccggctactcgccgtcgtcgccg
ctccttgacggcggcgtcgggcgctacgccacgtcgccgtcctttagcccctcctcgccg
tccttttcgccaacctcgcccatgctgcggcccaccagccctgccagcccaaactacagc
ccgacgtcgccgagctactcgcccacgtcgcccacgtctccccggcactactcccccacc
tcgcccgcgcagttcaactcgcccacctcgcccagctactcgccggccagccccaactac
agcccggcctcgcccaacctgcacggcgccggcgccacctctccctcttactctccagcg
tctccctcgtggtcgccgacgtcaccggaggcgtactcgcccaccagcccaagcttccag
agaagccctgggaaccaacaaagtcccacgagccccagctactcgcccacctcgcctgcc
ttttctccccggacgcctggtccgggcaactcgggcaatcaatattcccccaactcgccc
tctaacgattga
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integrated database retrieval system
