KEGG   Vibrio alfacsensis: D1115_01340
Entry
D1115_01340       CDS       T05841                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vaf  Vibrio alfacsensis
Pathway
vaf02024  Quorum sensing
vaf03018  RNA degradation
vaf05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D1115_01340
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D1115_01340
   05111 Biofilm formation - Vibrio cholerae
    D1115_01340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vaf03019]
    D1115_01340
   03036 Chromosome and associated proteins [BR:vaf03036]
    D1115_01340
Messenger RNA biogenesis [BR:vaf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     D1115_01340
Chromosome and associated proteins [BR:vaf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    D1115_01340
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AXY00096
UniProt: A0ABN5PC57
LinkDB
Position
I:255695..255901
AA seq 68 aa
MPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAISTVVPARPVSHHSGDRPQGD
RPQEKSED
NT seq 207 nt   +upstreamnt  +downstreamnt
atcccggtatctatctaccttgtgaacggtattaaacttcaaggtcagatcgaatcattc
gatcagttcgtgatcctattgaaaaacactgtaaaccaaatggtgtacaagcacgcaatc
tctacagttgttccggctcgtccagtgagccaccacagtggtgatcgtcctcaaggtgat
cgtccacaagaaaaatctgaagattaa

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