Vibrio alfacsensis: D1115_01340
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Entry
D1115_01340 CDS
T05841
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
vaf
Vibrio alfacsensis
Pathway
vaf02024
Quorum sensing
vaf03018
RNA degradation
vaf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1115_01340
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
D1115_01340
05111 Biofilm formation - Vibrio cholerae
D1115_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaf03019
]
D1115_01340
03036 Chromosome and associated proteins [BR:
vaf03036
]
D1115_01340
Messenger RNA biogenesis [BR:
vaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
D1115_01340
Chromosome and associated proteins [BR:
vaf03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
D1115_01340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AXY00096
UniProt:
A0ABN5PC57
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All DBs
Position
I:255695..255901
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AA seq
68 aa
AA seq
DB search
MPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAISTVVPARPVSHHSGDRPQGD
RPQEKSED
NT seq
207 nt
NT seq
+upstream
nt +downstream
nt
atcccggtatctatctaccttgtgaacggtattaaacttcaaggtcagatcgaatcattc
gatcagttcgtgatcctattgaaaaacactgtaaaccaaatggtgtacaagcacgcaatc
tctacagttgttccggctcgtccagtgagccaccacagtggtgatcgtcctcaaggtgat
cgtccacaagaaaaatctgaagattaa
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