Verticillium alfalfae: VDBG_02238
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Entry
VDBG_02238 CDS
T02227
Name
(RefSeq) pectate lyase Pel-34K
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
val
Verticillium alfalfae
Pathway
val00040
Pentose and glucuronate interconversions
val01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
val00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VDBG_02238
Enzymes [BR:
val01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
VDBG_02238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
9533901
NCBI-ProteinID:
XP_003008050
UniProt:
C9S9R6
LinkDB
All DBs
AA seq
326 aa
AA seq
DB search
MKYSAYLALIPSALASVVPRQDPCQASADGFASLNGGTTGGAGGTVVTVSTLADLEKYAA
AAGPHVIKVEGRIPVVPFGKEVSVSSDKTIVGVGEDAEIFQGGFRLIKVSNVIIRNLIIG
HSSDGTDNDYDGIQSDTSSNIWIDHCLFEEAGDGLVDLRKDTNYFTVSNNIFRKHDKAFG
IGWTENVVARGTIHHNWFDSTNQRNPSADNLAEAHLYNNLVSGVTSYGHYVRGATTAVIE
NVFFEDTKNPITRDEGAALRTKGNIFEGTGGTIAKDAGEAFDPASYYSYTLTKTADVPAF
EKNQEKPGPPYEGMLVAEDIMPRMWQ
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattccgcttacctcgccctcattccctcggcgcttgcctcggtggttccccgc
caggatccttgccaggcttcagccgacggcttcgcatctctcaacggtggcaccactggc
ggtgccggcgggacggtcgtcacggtctcaacgctggccgatctcgaaaagtatgcagcc
gccgcaggccctcatgtaatcaaagtcgagggccgtatccctgttgtgcccttcggcaag
gaagtcagcgtttcaagcgacaagacgattgtcggcgttggagaggacgcagagatcttc
caaggcggcttcagactgataaaagtcagcaatgtgattatccgaaacttgatcatcggc
cactccagcgacggcaccgacaacgattacgatggaatccagtcagacacatcatcgaat
atctggattgatcattgcctttttgaagaagccggcgacggtctcgtcgacctccgcaaa
gatacaaactactttaccgtctcgaacaacatttttcgcaaacatgacaaggccttcggc
atcgggtggacagaaaacgtcgtcgctcgtggcactattcaccacaactggtttgactcg
acgaaccagcgcaacccttcagctgacaacttggctgaggcacacttgtacaacaacttg
gtcagtggtgtgacttcgtacgggcactacgttcgtggtgccacgacggctgttattgag
aatgtgttctttgaggatacgaagaatccaattacgcgggatgaaggagcggcgctccgc
acgaaggggaatatcttcgagggcactggcgggacgattgcgaaggatgctggagaagcc
tttgacccggcttcgtactactcgtacacgttaacgaagacggcggacgtaccggccttt
gagaagaaccaagagaaacccggtccgccgtacgagggcatgctcgtagccgaggatatc
atgcccagaatgtggcagtag
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