Verticillium alfalfae: VDBG_08404
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Entry
VDBG_08404 CDS
T02227
Name
(RefSeq) pectate lyase B
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
val
Verticillium alfalfae
Pathway
val00040
Pentose and glucuronate interconversions
val01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
val00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VDBG_08404
Enzymes [BR:
val01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
VDBG_08404
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
BIV_Env
2CompART
Motif
Other DBs
NCBI-GeneID:
9529409
NCBI-ProteinID:
XP_003001359
UniProt:
C9STY3
LinkDB
All DBs
AA seq
314 aa
AA seq
DB search
MLNSKIALALFAAVGAAVAQCGNAAVDELVGYGAATTGGGNAPPVVVTTCSQFTAALKNS
GVIHVSGIIDGCGILRVENNTSVLGLGAKSGLTGGGLRLYKVDNIILRNLHLSMAPRGGD
LVEAERSTNIWIDHLDLSNAGIVGNKDFYDGLLDIKRASDWVTVSWTKFHDHWKGSLIGH
SSSNTKQDAGTMHVTYHHNSFINVNSRLPSIRFGTGHIYSSCYLDNPTSGVNSRENAQVL
VESTYFENTRRAIVTDLDAKLEGWAVERNNVYVNSDIDITQVGSFVAPPYSYDVDAASCV
CDLIESQAGTGVVG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacagcaagatcgctctggccttgttcgctgccgtcggcgctgcagtggcccag
tgtggaaacgctgctgtcgatgagcttgttggctacggcgctgccaccactggcggaggc
aatgccccgcctgttgttgtgaccacatgcagccagttcacggcggctctgaagaacagc
ggtgttattcacgtcagtggaatcatcgatggctgcggcatcctccgtgtagagaacaac
acctcggttctcggcctcggtgccaaatccggcttaaccggaggtggcctgcggctgtac
aaggtcgataacatcatccttcgcaaccttcatctcagcatggcgccccggggcggcgac
cttgttgaggctgagcgcagcaccaacatctggatcgaccatctcgatctctcaaacgcg
ggcatcgtcggcaacaaggacttttacgatggtctgctcgacattaagcgtgcatcggac
tgggtcaccgtctcgtggaccaagttccacgaccactggaagggctccctcatcggccac
tcgagcagcaacacaaagcaggacgccggcacaatgcatgtgacataccaccacaacagc
ttcatcaacgtcaactcgcgcctgccttccatccgcttcggcaccggccacatctacagc
tcgtgctacctcgacaatccgacatcaggcgtcaactcgcgcgagaacgcgcaagtcctc
gtcgagtcgacgtactttgagaacacgcgccgcgccatcgtcacggacctcgacgcgaaa
ctcgagggctgggctgtcgagcggaacaatgtctacgtcaactcggacattgacattacg
caagtgggcagctttgtggcaccgccttacagttatgatgtcgatgctgctagttgtgtg
tgcgacttgatcgagagccaggctggaactggagtcgttggctga
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