Verticillium alfalfae: VDBG_09319 Help Entry VDBG_09319        CDS       T02227                                  Name (RefSeq) hypothetical protein   KO K12604   CCR4-NOT transcription complex subunit 1 Organism val  Verticillium alfalfae Pathway val03018   RNA degradation Brite KEGG Orthology (KO) [BR:val00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     VDBG_09319  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_09319 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      VDBG_09319   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      VDBG_09319 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT ARM_Cnot1 Motif Other DBs NCBI-GeneID:  9534212 NCBI-ProteinID:  XP_003000824 UniProt:  C9SWP4 LinkDB All DBs AA seq 1684 aa AA seqDB search MVPPSRAGSFSPNPAQTLQTGNIHSPNPSQGGQFSSGASPSTHSPTGTNPLAKIVVAQIY LLLSTIKEDKGRVKRETQADQLKKLLDDHGMEVFSKYFTRLVAGNAGQIFPGLTRPVSNP GNYHLLVNEMRNIAHDANQAIKIAESIDSGTEDIFRDFDLSTFMEHFKLDALEKTILALA FKLGSRSDLKTKADAILSTNFPTFVNIIARPDLEEHADLTDSFIATIVDRFIHLWQRDRE WVTQRLIDAHAVKPTDLPLIFEHAVKHKWLEDLVSLTSGFGLDLAAFAHAEGYLDLGHWA RQNSERSAEVARSLQQFLLIKANLELQYQRPPDGQSIVKSTTLQVKTVSALLQILEDFMP KAPVHDLILVQRSCITVYPRLINYGEGYDDVIDANGADGNALPLAANAKMEEHYKKMYGD EIQVRNIVDVLRRYKHSRDPLDQDVFACMIHGLFDEYAHYVDYPLEALATTAVLFGGIIS HKLIADLPLKIGLGMILEAVRDYPPDVSMYKFGLQALMQLFSRFREWPGFCKQLLQIPGL QGTEAWKKAEDVVREHEEEGSRSRTGPNPPTHAAAFSAEPVPNGGADESRDADRQAPPFA SINAESSFPALAFESPSDDTQGKIQFVLNNLTETTLQSMCKELRDMVEQRHQQWFASHLV EERAKMQPNYHQVYLDLVKLFEDKVLWAEVLRETYLSVARMLNSEATITNPTERSHLKNL GGWLGLLTLARDRPIKHKNIAFKQLLLEAHDTKRLVVVLPFVCKVLIQGIHSTVFRPPNP WLMDIIHLLIDLYHHAELKLNLKFEIEVLCKGLSLDHKTIEPSGEILNRTAADEPLELLG HDNLESFDNLSLNGLATGVSAGLSPQILPASIPDLAPMIQIPPTNEMVVATTRLHDIVRT ALTRALQDIIQPVVDRSVTIAAISTREMIRKDFATEPDENRIRTSAINMVKATAGSLALV TSKEPLRGNFTNYLRNLSNDLPQGLPEGTIIMCVNSNLDLACNIIEKQAEERAVPEIEEM IETELDARRRHRAQRPNEPYVDPSLSRPHPVLDVVDALVQHMIKTSQNSEEFALFAAEQI IQLIFSQVEDNLALESLVHVLETLRKISGPGLNNRVTTLFRQQPGSSFLRLPLLAALLRT DLIDWRNVDVALAKTVQQRKEGSLEFLEQMIDLTLLGTRPLALYGDFVRTLDVAWTLVHD DPESPVSQRLLTKLSSQGISLSVAADTDIFASTRSKWRMFLMNGFIFYGNPNAPDDSAVL FARQKQPEVLLRNKDDLFFLSGSPSTSVLTALLTLVLSHHHLKRVDPFNQRVFHRLLSVL LHEVGAIESQVDELEQLDMLLRIASRLADLSPRYLPGFAYGWLSLIQHRAFLPVILKERA GWSAYTTLLRMLFEFVGEQLKAPEPTAVARDTYRATLKLLVVLQHDFTEYIAAHSDQLRI SLPPHCKQLINAILAANPASQDALSPNADQSNGLKAKEGTEDDTPILLREHGLLGVVDQA LHTGPSEDGLAHMTRAIIESDARETGFALVSINANLSVIEAIILHIGKYAVGRLAQGGES FNPSSTDVAILSLLMHELAPEPRYYLVVGMVNQLRFPGDMTSYFSRVLLEIFGRDLNDPD DTEIRQQITRVLWERLIGFWPQPWGLMITVLELLKNEKYAFFDLPFVKSSPEIIDRFHAV LQRA NT seq 5055 nt NT seq  +upstreamnt  +downstreamnt atggtgccgccatcaagagcgggatctttttcaccaaatcctgcacagactctgcagaca ggaaacatccactcgcccaacccatcgcaaggagggcagtttagctcgggcgcgagtccc agcacgcatagcccgaccggaaccaatccactggctaagattgtcgttgctcagatatac ctgcttttgagtaccattaaggaggataagggtcgcgtcaaacgggagacccaggcggat cagcttaaaaagctcctcgatgatcacggcatggaggtgttttctaaatacttcacccgg cttgttgccggcaacgctggccagatttttcctggcttgacgcgaccggtctcgaatcct gggaactaccacctccttgtcaatgaaatgcgaaatattgctcacgatgcgaatcaagca ataaaaattgccgaatccatcgattctggtacagaggatatattccgtgattttgacctg tcgactttcatggaacattttaaacttgatgctctcgagaagaccatacttgcgcttgca ttcaagcttgggtcgcgatctgacctgaagaccaaggccgatgccatcctctcaacgaac tttcctacttttgtcaacattatcgctcgtccagacctcgaggagcatgccgacttgacc gactcattcattgccactatcgtcgaccgcttcattcacctttggcaaagggaccgggaa tgggtgactcaaaggcttattgacgcccacgccgtcaagccgaccgatctgcctctaatc ttcgagcatgcagtcaagcacaagtggctcgaggacctcgtttcgcttaccagtggcttt ggtttggacctcgcagctttcgcacacgcagaaggctacctagaccttggacactgggct cgacagaattccgaacggagcgccgaagtagcccgatccctacaacaattcttgcttatt aaggcaaatcttgagcttcaatatcaacgcccgcctgatgggcagtccatcgtcaaatcc acgacccttcaagtcaaaaccgtctcggcacttctccagatattggaagacttcatgccc aaggctccggtccacgacttgatcctggtgcagcggtcttgtatcactgtctacccccgc ctgatcaactatggggaagggtatgacgacgttatcgatgcgaacggtgctgacggcaat gcattgccattggctgcaaatgcgaaaatggaagagcactacaaaaagatgtacggcgac gagatacaggttcggaatatcgtcgacgtcctccgtcggtataaacactctcgcgatccc ctcgatcaggacgtcttcgcttgcatgattcatgggcttttcgacgagtacgctcattac gtggactatccgctcgaggcactcgcaaccacagcggttctatttggcggtatcatatcg cataagctgattgcggatctaccgctcaagatcggactgggtatgattcttgaagctgtg agagactatcctccagatgtctccatgtataagttcggtctgcaagctttgatgcaactt ttttcacgttttagagagtggcctggattctgcaagcaactgctgcagatacccggcctc caaggaacagaagcatggaaaaaggccgaggacgttgtccgagaacatgaagaagagggc agccgttcgcgcaccggccccaacccacccacccacgcagctgcgttctctgctgagcct gtccccaacggcggtgctgacgagtcccgtgatgctgatcgccaagcacctccatttgcc tcgatcaacgcagaaagttcattccccgcgcttgcatttgagagtccgtcggatgacacc cagggaaagatccagttcgtcctcaacaatcttacagagaccactctccagtctatgtgc aaggaactacgagacatggtcgagcagaggcaccagcagtggtttgccagccatcttgtc gaagagcgtgcgaagatgcaacccaactatcatcaagtctacttggatttggtgaaactt ttcgaggacaaggtcctttgggcggaggtcttgagagagacttatctcagcgttgcacgt atgctcaactccgaggcgaccatcactaaccctaccgagcgctctcacctcaagaatctc ggtggttggctgggacttttgaccttggcacgggacagaccgatcaagcacaagaacatt gcttttaagcagcttctcctcgaggcacacgataccaagaggctggttgttgttcttccg ttcgtctgcaaggttctgattcaaggaattcactcaacagtctttcgcccccccaacccc tggctcatggatatcattcacctactgatcgacctttatcatcatgcggaactcaaactc aaccttaaattcgagatcgaggtgctctgcaaaggacttagcttggaccataagacaatc gagccctcgggcgagattcttaatcgtaccgctgccgacgagccattagagcttctcggt cacgataacctggagtcatttgacaatctgtcgctcaacggcctagctacaggcgttagc gcaggtttgtcaccacaaatcctcccagcatcaatcccagacctcgcgccaatgattcaa atacccccgaccaatgagatggtggttgccaccacgcgactgcacgatatcgtgcgcact gccctcactcgcgcgttgcaagatatcattcagccggtagttgacagatcggtgaccatt gcagctatttcaacgagggaaatgatacgcaaggattttgctacggagcccgacgaaaac agaatccgcacatctgctattaatatggtaaaagcaactgctggtagcctcgcactcgta acgtccaaggagccactcaggggaaacttcaccaactacttgcgaaacctttccaacgac ttgccgcagggcttgcctgaagggaccatcataatgtgcgtcaattcgaacttagacctc gcctgtaacatcattgaaaaacaggccgaggagagggcggtgcctgagattgaagagatg atcgaaaccgagttggacgctcgccgccgccatcgcgcgcagagaccgaacgaaccatac gtcgatccttctcttagtcggccccatcctgttctcgacgtggtggatgcattggttcag cacatgatcaagacttcacaaaattcggaagaatttgccctctttgctgctgagcaaatt atccagcttatattcagccaggttgaagacaatcttgctctggagagtttggttcacgtt cttgaaaccctgcgcaaaatctctggaccggggttgaacaatcgagtgacgacactgttc cgacaacaacctggctcgagcttccttcgcctgccgctcctggctgccctgttgcgaaca gacttgatcgactggagaaatgttgacgttgcgctggctaagacggtgcagcaacggaaa gaaggttccctggaattcctggaacagatgattgacctgaccctcttggggactcggcca ctggccctatacggcgacttcgtacgcaccctggatgtcgcatggactttggtccacgat gatccggaatcgcctgtttctcagcggctattgacgaagctgtcaagccaaggtatttct ctgagcgtggcagcggacaccgatatctttgcatcaacgagatcaaaatggaggatgttt ttgatgaatgggttcatcttctatggcaaccccaatgcgcccgacgattccgcggtgctc tttgcgcgacagaagcagccagaggtcttgctaaggaacaaagacgatttattcttctta tcagggtcgccgtcgacgtctgtgttgacagccctgctgaccctcgtcctgagccatcat catttgaagcgagttgaccccttcaatcaaagggttttccatcgtctgctatccgtcttg ctccatgaagtgggcgcaatcgaaagtcaagtcgatgagcttgagcagcttgacatgctg ctgcgaattgcctcccgactcgcggatctcagtccccgataccttccgggcttcgcctat ggctggctgtcgcttatccaacacagagcatttctacctgttatcctgaaggagcgtgca ggctggtcagcgtatacgacactcctacgcatgctcttcgaattcgttggggaacagctc aaagctcctgagcccaccgccgtggcacgtgatacataccgtgcgacattaaaactgctc gttgtcctgcaacatgatttcacagagtacatcgctgctcattccgaccagctacgcata agcttgcctccccactgcaagcagcttatcaatgctattctcgccgcaaacccggcatct caggatgctctgagtcctaatgcggatcaaagtaatgggttgaaggcgaaagagggtacc gaagacgacactcctattttgctgagggagcacggtctcctgggcgtagtcgatcaggct ctgcacactggtccatcggaagacggcttggctcacatgacgcgtgccatcatcgaatct gacgcccgcgaaaccggatttgcgctcgtcagtatcaacgcgaatctatccgtcatcgaa gcgatcatactccatattggcaaatacgctgtggggcgtttggcccaaggaggagagtct ttcaacccatcttcgacggacgtcgcaattttgtcgctattgatgcatgagctggcgccg gagccccgctattacctcgttgtcggcatggttaaccagctgaggttccctggcgatatg acgagctacttcagtcgagttctgctggaaattttcggccgcgacttgaatgatcccgac gacacagagatccggcagcagatcacgcgcgtgttgtgggaacgactgatcggtttctgg ccacagccttggggcctcatgatcacggttctggagcttctgaagaacgaaaagtatgcg ttcttcgacctaccatttgttaagtcgtcacccgagataatcgatcgtttccacgctgtt cttcagcgtgcgtaa

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