Variovorax sp. PMC12: C4F17_26675
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Entry
C4F17_26675 CDS
T05380
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4F17_26675 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_26675 (xth)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
C4F17_26675 (xth)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
C4F17_26675 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AVQ84248
UniProt:
A0A2P1VGE2
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All DBs
Position
1:complement(5691677..5692462)
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AA seq
261 aa
AA seq
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MKIATWNVNSLTARLQHVLDWLIANPVDVLCLQELKMTDDKFPLEVLKSAGYEAAVFGQK
TYNGVAILSLAPVRDVVKNIGGFTDDQSRVIAATVETPSGPLRVVNGYFVNGQAPGSDKF
EYKMKWLDALRDWLRQEMVANPNLVLLGDFNITPEDRDSFDPVGLKETIHHTTEERKHFK
ALLDLGLTDSFRMFEQPEKSFSWWDYRMLGYQKNRGLRIDHILVSEPLVPRVKGCVVDRV
PRKWEKPSDHAPVVLDLDQGA
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgccacctggaacgtcaactccctcaccgcgcgcctgcagcacgtgctcgac
tggctcatcgccaacccggtcgacgtgctgtgcctgcaggaactgaagatgaccgacgac
aagttcccgctcgaggtgctcaagtcggccggctatgaagcggcggtgttcggccagaaa
acctacaacggcgtcgccatcctgagcctcgcgccggtgcgcgacgtggtgaagaacatc
ggcggcttcaccgacgaccagtcgcgcgtgatcgcggccacggtcgagacgccctcgggt
ccgctgcgcgtggtcaacggctacttcgtgaacggccaggcgccgggcagcgacaagttc
gaatacaagatgaagtggctcgacgcgctgcgcgactggctgcgccaggagatggtggcc
aacccgaacctcgtgctgctgggcgacttcaacatcacgccggaagaccgcgacagcttc
gacccggtgggcctgaaggaaaccatccaccacacgaccgaggagcgcaagcacttcaag
gcgctgctcgacctgggcctgaccgacagcttccgcatgttcgagcagcccgagaagagc
ttctcgtggtgggactaccgcatgctgggctaccagaagaaccgcggcctgcgcatcgac
cacatcctggtgagcgagccgctggtgccgcgcgtgaagggctgcgtggtcgaccgcgtg
ccgcgcaaatgggaaaagccgagcgaccacgcgcccgtggtgctggacctcgaccagggt
gcctga
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