Variovorax paradoxus S110: Vapar_4144
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Entry
Vapar_4144 CDS
T00916
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
vap
Variovorax paradoxus S110
Pathway
vap02020
Two-component system
vap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Vapar_4144
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Vapar_4144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vap03021
]
Vapar_4144
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vap02035
]
Vapar_4144
Transcription machinery [BR:
vap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Vapar_4144
Bacterial motility proteins [BR:
vap02035
]
Flagellar system
Flagellar assembly proteins
Stator
Vapar_4144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
MarR_2
HTH_37
HEAT_2
Motif
Other DBs
NCBI-ProteinID:
ACS20757
UniProt:
C5CXQ1
LinkDB
All DBs
Position
1:4389256..4389987
Genome browser
AA seq
243 aa
AA seq
DB search
MYTAQGTFEKSHLLKQHQPMVRRMALQMLAKLPASVELDDLIQAGMIGLLDASTRYQDNR
GAQFETFASQRIRGAMLDELRASDWGSRGLRQSARKVEQAIQALEHRLGRSASEGEIARE
LKMELDDYQSLLQDIQGCQLLYVEDFAQDGEAENPWLERQAQADARLGGDDPLAQLLEAG
FRHELVDAIAALPERDQLLLNLYYEEELNLREIGAILEVTQSRVCQLHSQAISRLRAKLK
DSF
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaccgcgcagggaacctttgagaagtcccacctgctgaagcagcaccagccgatg
gtgcgccgcatggcgctccagatgctggccaagctgcccgccagcgtggagctcgacgac
ctgatccaggccggcatgatcggcctgctcgacgcttccacgcgctaccaggacaaccgc
ggcgctcagttcgaaaccttcgccagccagcgcatccgcggcgccatgcttgacgaactg
cgcgcgagcgactggggctcgcgcggcctgcgccagtcggcgcgcaaggtcgaacaggcc
atccaggcgctggagcaccggctcggccgctccgccagcgaaggagagatcgcccgggaa
ctgaagatggagctggacgactaccagtcgctgctgcaggacatccagggctgccagctg
ctctacgtggaagacttcgcacaggacggtgaggccgaaaacccctggctcgagcgccag
gcgcaggccgacgcccggcttggcggcgacgatccgctcgcgcagctgctcgaagcgggt
ttccgccatgagcttgtcgatgcgattgccgcgctgcccgagcgcgaccagctgctgctg
aacctgtactacgaggaagagctgaacctgcgagagatcggcgcgatcctggaagtgacc
cagtcgcgcgtgtgccagctgcacagccaggcgatcagcaggttgcgggcgaagttgaag
gattcgttttag
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integrated database retrieval system
