Vigna angularis (adzuki bean): 108334029
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Entry
108334029 CDS
T04660
Name
(RefSeq) uncharacterized protein LOC108334029 isoform X1
KO
K18734
protein SMG8
Organism
var
Vigna angularis (adzuki bean)
Brite
KEGG Orthology (KO) [BR:
var00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108334029
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108334029
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
DUF7937
Motif
Other DBs
NCBI-GeneID:
108334029
NCBI-ProteinID:
XP_017425100
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Position
11:complement(5199290..5206991)
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AA seq
1211 aa
AA seq
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MEQRNPSPSPSPVRVLIRPPSSPSPSTTDHPSPSPSPSQAPLPRASDGVVVVGFIARRHD
DSAQLLDRVIDSNVFASGNLDAPLLVDDEEAREWFERRRISYFHDHERGILFLQFSSTRC
PAIHTAADVATPGFDSAVEEHEFGDLQGMLFMFSVCHVIIYIQEGSHFGSRILRNFRVLQ
SAKHAMAPFVRSQTMPPLPARSHPSSSSRSASAANNSSPGRGGGNLSRNVSAISLMSGLG
SYASLFPGQCIPVTLFVFIDDFSSLSNSSANGEDSSDSTSLSQSSSLSGAAKGNLSAKGS
GSVVVLARPASRSEGGFRKKLQTSLEAQIRFLVKKCRTLSGPEITHPGIRTAGSSTAAPL
FSLDASRTVVLLDRFSNQRGESLEFAIGLVDDVLNGKATPDSLLLESHGQSATKEDLISV
KEFIYRQSDILRGRGGLINTNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPNLEVWL
SSSRHILSGVLCAKGGSLDEFDIVKRKPHSRNTVSSSAEGSLKNTNPLDVAVSWLQSGRG
LNTKFSTMWCQRAIPAAKELYLKDLPACYPTSQHVVHLDKALNAFRSMVKGPSVELFAKK
LEDECTSIWKSGRQLCDAVSLTGNPCMHQRYDAETSNSDLGASPKPHSSGYFFLHACACG
RSRQLRPDPFDFESADDSCFSDCDKLLPAVKLPETEVAAPVKSSAWSLLRIGGASYYESS
KGLLQSGFSATEKFLLKWTIYLEKKKIPNGSTESIVKQGSVIRAPKVESIADAKKTGVIQ
THPAVLNGVEDIGTSLDVMKVDDKKISFGRGFPIFKMRKPFSEVVAGSTASDSGFPPLQQ
RKFPTPGSEKGIKQSRSTNQTVEQINVAIDHQLSQNVSSTQGHVDGNGNNISRDSDPFLR
IGSNVVPVYSNDVEKNKSHSLKHVVVYVGFEHECPRGHRFLLNAEHLAKLGSSYSSSEES
HVSSMEPSGINQAGHTKVSKNSSWNKVHRSSNEILSVASNKERDVNKSNEMIPNGDSNSD
GLTHTDILLKQYNLNSTNTFGKPLNLMKDFGGDIHAISMGGDDLAWSMLNQNLPIYMICP
HCKLSRNNKDTPKFKFASGISQLKRIFLVTPAFPVVLATCPVVQFETSCLPPSVPDREKK
LQFSLGCEVILPPESFLTLKLPFVYGVQLEDGNKHPLNPFEQQPEMTAWIAKGTVLKILS
KWNSDEGYQPQ
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacgaaacccttccccgtcgccgtcacccgttcgagtcctcattcgccctccg
tcttctccctcgccgtcgaccaccgatcatccttcgccgtcgccgtcgccgtctcaggcg
ccgctcccacgcgcctccgatggcgtggtggttgtcggcttcatcgcgcgacggcatgac
gattccgcgcagctcctcgaccgtgtcatcgactccaacgtctttgcctccggaaatctc
gacgccccgctcctcgtcgacgatgaggaggcgagggagtggttcgagcggaggagaatc
agctactttcacgaccacgagagagggattttgttccttcagttctcttccactcgctgt
cccgcaattcacacggctgcggacgttgcgactccgggatttgattctgccgtcgaggag
cacgagttcggcgacctccagggaatgcttttcatgttctctgtttgtcatgttattata
tatattcaggaggggtcacactttggttctagaattttaaggaattttcgtgtgctgcaa
tcagctaagcatgcaatggctccctttgttagatcccaaactatgccgcctttgccggct
agatcgcatccttcatcgtcctcaagatccgcttcagcagcaaacaattcatctccaggt
agaggtggtggtaacttgagtcgcaatgtgtcggccatatctctcatgtcaggtttaggt
tcttatgcttctttgtttccaggacagtgcatacctgtcacactgtttgtattcatcgat
gacttctccagtttatctaattccagtgcaaatggggaggattcttcagatagtacttca
cttagtcaatcgtctagtttgagtggagcagccaagggaaacttgtctgctaaaggttct
ggttcggtagtagtgctggcacgccctgcaagccgatctgaaggtggatttaggaagaaa
ctacagacatctcttgaagcacaaattcgctttctggtgaagaaatgccggacgttatca
ggtcctgaaataactcatcctggcataaggactgcaggttcctcaactgctgcccctttg
ttttcacttgatgcatctaggacagttgtcttattagaccggttttcaaatcaaagaggt
gagtctcttgagtttgccattggccttgttgacgatgtattaaatgggaaagcaactcca
gattcccttttgcttgaaagccatggtcaaagtgcaaccaaagaagatttaatatcagtt
aaggagttcatttacaggcaatctgatattttgagagggagagggggactaattaatacc
aacagtggctcagctgctggtgttggcatggttgctgttgcagcagctgcagctgctgcc
tcagctgcatctgggaaaacgtttactactcctgatcttccaaatcttgaagtttggtta
tcttctagtcgtcatatcttgagtggagttctctgtgcaaaaggtggttccctggatgaa
tttgatattgtcaaaaggaaacctcattctcggaatactgtttcatcctcagcggaagga
tctttgaagaatacaaatcctttagatgttgcagtatcttggttacaaagtggtagaggg
ttgaacactaaattctcaactatgtggtgccaaagagccattccagccgcaaaggaactt
tatttgaaagacttgcctgcttgttatcctacttcacaacatgtggtccatttagataaa
gcattaaatgcatttcggtcaatggtgaaaggaccttcagtggaactatttgcaaaaaaa
ttggaagatgaatgcacttccatatggaaatcaggaaggcaactatgtgatgctgttagt
ttgacaggaaacccatgcatgcaccagaggtatgatgctgaaaccagtaattcagattta
ggagcctcgcccaagccacattcaagtggctattttttccttcacgcttgtgcttgtggg
cgttcccgacagttacgtcctgatccttttgattttgaatcagctgatgacagttgcttc
tctgactgtgataagctacttcctgcagtcaaattaccagaaacagaagttgcagcacct
gttaaatcttctgcttggagtttgcttcgtattgggggtgctagctactatgaatcttct
aaaggcttacttcaaagtggattttctgccactgaaaaatttcttttgaaatggacaata
tacctagaaaaaaagaaaataccaaatggttctacagagagtatagtgaagcaaggctct
gtaattagggcacccaaggttgaatccattgcagatgcaaagaaaactggggttatacaa
acccaccctgctgtgctgaacggagtggaagacattggaacatctttagatgtcatgaag
gttgatgataaaaagataagttttggtagaggtttccctattttcaaaatgagaaaacct
ttttctgaggttgttgctggatccacagctagtgattcaggattccctcctcttcaacaa
aggaagtttcctacaccaggttcagaaaagggtatcaaacaaagcaggtctactaatcag
actgttgaacagattaatgtagccattgatcatcaactatctcaaaatgtttcatctact
cagggacatgttgatggcaatggcaacaatatcagcagggacagtgatccttttttgcgg
attggtagcaatgtagtacctgtatactcgaatgatgttgaaaagaacaaatcacattct
ttgaagcatgtagtagtatatgttggatttgagcatgaatgcccccgtggccaccgtttt
ctgttgaatgcagaacatcttgccaaacttggttcttcatactcatcatcggaagaatct
catgtatcttctatggagccttctggcataaatcaggcaggtcatactaaagtaagcaag
aattcttcctggaacaaagttcatcgaagctcaaatgaaattctttctgtagcctcaaat
aaggagagagatgtaaacaaatctaacgaaatgattcctaatggtgattcaaattcagat
ggattaacacatacggacattttgctaaagcaatataatttgaactcaacaaatacattt
ggaaaacccctgaatcttatgaaggattttggaggagatattcatgctattagcatgggt
ggtgatgatcttgcatggtccatgttgaatcaaaacttgcctatctacatgatctgtcct
cactgcaagctttcaaggaataacaaggatacaccaaagtttaagtttgcaagtgggatc
tcacagcttaaaagaatttttctggtgacacccgcatttccagtggtactagcaacatgc
cctgttgtacaatttgagacatcatgcttgcctccctcagttccagatcgtgagaaaaaa
ttgcagtttagccttggatgtgaagtgatcttgccaccagagagcttcctgacacttaaa
ttaccatttgtgtatggtgtccagcttgaagatggcaacaaacatcctcttaaccccttt
gaacaacagcctgaaatgactgcctggatcgccaagggcacagtactgaagatcttgtcc
aagtggaacagtgatgagggatatcaaccacagtaa
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