Vigna angularis (adzuki bean): 108347373
Help
Entry
108347373 CDS
T04660
Name
(RefSeq) uncharacterized protein LOC108347373 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108347373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108347373
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108347373
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108347373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
108347373
NCBI-ProteinID:
XP_017442053
LinkDB
All DBs
Position
9:31623250..31644201
Genome browser
AA seq
2405 aa
AA seq
DB search
MMTLPHSLPSMSNFSSNQIRFLLTTLNEVNFDSVFHQLCQFTEFGTTGCILLLQTCLDHY
GYARRDTKDLQHEPILGAVIKYLLDKPNFSTVFSESMKNMEINESFLENFCNGLQLSLLE
KIIISLALSDSENSDFRLCGKTFCMAQIEELCANPGSLSFHEQIHGIIMFLKQSEGLSKH
VDSFMQILSLVEFKATPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEM
NMGDIVKELGYGCTVDVSQCKEIFSLFLPLTEHTLSKLLGAIACTHTGLEDNQNTYVNFR
AAHGYNVSELPPLNSWNIDVLIDTVKHLAPHTNWVSVIENLDHEGFFLPSEEAFSFLMSV
YKLACKEPFPLHAVCGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSGRQLAYVDAINGHKL
QNGHPNHSWLCLDLLDALCQLAEKGHASVVRSILDYPLKHCPEVLLLGIAHINTAYNLLQ
QEVSPIVFPLIVKSAVGSGMILHLWHVNPNLVFRGIIDSQNNDADSIIRIVDICQELKIL
SSVVEIIPSHYSIRLAAVASRKELLDLEKWLSSNLITYKETFFEECLKFIKDAHFGGSQN
LSGKSFHPSSGVLSLYAETTATVLKVLKSHNDLVATRQLSEELERLHISIIDSNPRLQNG
GAGDSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESTVKREKSIFECMIA
NLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLF
GSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDGDGQSHAS
VITNHHSAQATLGHVEQLGGSTVIQPGQQHLSLQLQQRRENPLDDRHKASVGSSTDVKPP
LSSLGQSSVLPTDASNTNKLHSSVSTSSMLSSSSPGFVRPSRGPTSTRFGSALNIETLVA
AAEKREIPIEAPGSEVQDKILFIINNVSATNIEAKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMG
ILGLLVEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDV
GASQSQMITDIKSGLVPPVNQVELPLEVTNPSNAGAHPHMLSQYAGPLHMSSGALMEDEK
VTPLGLSDQLPSAQGLLQATPAPTPFSLGQMQPQIPNIGTHVIINQKLSGFGLQMHFQRA
VPIAMDRAIKEIVTSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSL
AHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAIS
TIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDF
VRLPWQNQSSQSSHSMSAGVAAQSGNTGLPSTNGSVSGQVNPGYPVSTGYEGVSRPLEDI
TESNLAPHFSASSIHIRASDSVSQHSLEKESVASFPSAASTPELHAVDSSDVKESGTSQS
LVTSGAMERLGSSFLEPSLTTRDALDKYQIVAQKLEAMVSTDSRDVEIQGVISEVPEIIL
RCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSEE
ERKYNKEITIGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVISE
LHNLVDALAKLATKPGCPEPLPQLLEMIKNPGALSSSNAGKEDKARQSRDIKVPGLLPAN
REEFNSVDSIEPDPAGFREQVSILFKEWYRICELPGANDTASTHFILQLHQNGLLKGDDL
TDRFFRLLLELAVAHCLSTEMINSGSLQSQQLQTMSFLAIDIYAKLVFSILKGSNKPFLL
SKILAVAVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANAF
HALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAEL
GDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPD
PSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLSELKDKMLL
APNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQSSANAFPLAVFSVGAALDIF
QTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQQEVIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDNM
VSGWV
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgatgactcttcctcattccttgccatccatgtctaacttttcctccaaccagattcgc
tttcttctcaccaccttgaacgaagtcaactttgactccgttttccatcaactctgtcag
tttactgaatttggaaccactggatgcattttgctgcttcaaacttgcttggatcactat
ggttatgccagaagagatacaaaagacttgcagcacgagccaattcttggtgcagtcatt
aaatacctcttggacaaaccaaacttcagtacagtattttctgagtcgatgaagaatatg
gaaatcaatgaaagctttttagagaacttttgtaatggattgcagttatctttattggaa
aagattatcatcagtcttgcgttatctgattctgagaattctgattttaggctgtgtggc
aaaaccttttgcatggctcagatcgaggaattatgcgccaatcctggttctttgagtttc
catgagcaaattcacggtattatcatgttcctaaagcagtccgagggtctttccaagcat
gtggattccttcatgcagatattatcacttgtggagttcaaagccacaccaccttttgtc
ctgactccattgcttcctgatgagatgcatgaggctgattttttaaggaatatggagttg
ttccacgactctggagaaaatgattttgatgctatcttggcagacatacagaaggaaatg
aacatgggtgatattgtgaaggagctaggctatggatgcactgttgatgtctcacagtgc
aaggaaatattttcactcttcttacctttaactgaacatacactctctaaattacttggt
gcaattgcttgtacccatactgggctggaggacaaccaaaacacatacgtaaattttcgt
gcagcccatggatacaatgtttctgagttgccgcccctaaactcttggaatattgatgtc
ttgattgatacagtcaagcatcttgcacctcataccaattgggtaagtgttattgaaaat
cttgatcatgaagggtttttccttcctagtgaagaggcattctcttttctcatgtctgta
tataaacttgcctgtaaggaaccgtttcctctccatgctgtttgtggatctgtctggaag
aatactgagggtcagttgtctttccttaaatatgctgtatcagcaccaccggaaatgttt
acctttgcacactctggaagacagctggcatatgttgatgcaattaatggccacaagctt
caaaatggacatccaaatcattcatggctgtgtcttgaccttttagatgcactgtgccaa
ctagccgagaagggtcatgccagtgttgttcgttcaatccttgattatcccctaaagcac
tgtcctgaagtcctacttcttgggatcgcacatattaatactgcctacaacctcttgcag
caggaagtatctccaattgtctttcccttgattgttaaaagtgctgtaggcagtgggatg
attctacacctttggcatgttaatcctaatttggtctttagagggattattgattctcaa
aacaacgatgcagacagcattataagaattgtggacatctgccaggagctaaagatttta
tcatctgtggtggaaattattccttctcattatagtataaggttagcagctgttgcatca
agaaaagaattacttgaccttgagaagtggttgagtagcaacttgattacatacaaggaa
accttttttgaggagtgtctcaagttcattaaggatgcccattttggtggatcgcagaac
ctttctggcaaatcttttcatccatctagtggtgttctgagcctatatgctgagacaact
gctactgttttgaaggttcttaaatctcataatgacttggttgccactagacaactttct
gaggagttggagaggctgcatatatctattatagattcaaatccaaggcttcagaatggt
ggggcaggcgattcatctacttctgatggttatgcagatgacattgaagcagaagcaaac
tcttatttccatcaaatgttctctgatcagttgaccattaatgcaatggtacaaatgctt
gctagattcaaggaatctacagtgaagagggagaaatcgatttttgaatgcatgattgca
aacttattcgaggagtatagattttttccaaagtatcctgaaaggcaactcaaaatagct
gcagttctctttggttctgtgatcaagcatcagcttgtaactcatctatccttggggatt
gcacttcgatatgttcttgatgcattgcgcaagcctgcagattcaaaaatgtttttgttt
ggaagtctggcattggagcagtttgtggatcgtctaattgagtggcctcagtactgcaat
catattcttcaaatttcccatttgcgtagtacgcattcagaaatagttgctttcattgag
caggccctcgccaggatttcctctggtcattcagatggtgatgggcagagtcatgcttcc
gttattactaaccatcattctgcgcaggctacattagggcacgtagagcagcttggtggc
tccaccgtcatacaacctgggcagcaacatttgtcgctgcagcttcaacagagacgtgaa
aatcccttggatgatcgtcataaagcttctgtgggttcatccactgatgtaaaaccaccg
ttatcttctctggggcaatcttcagtactacctactgatgcttctaataccaataagtta
catagctccgtcagcacctcgtcaatgctatcttcttcttctcctggttttgttcgccct
tcccgtggacctacttctaccaggtttggatctgccttgaacattgaaacattggttgct
gctgctgagaaaagagaaattcctatagaggctccggggtcagaggttcaggacaagata
ttatttattattaataatgtttctgctactaatattgaagctaaagcaaaggagttcact
gaaattttgaaagaacagtactatccttggtttgcgcagtatatggttatgaaaagagca
agcattgagccaaatttccatgacctgtacctgaaattcctggataaagttaattcaaag
gctttgaacaaagagattgttcaggcaacttatgaaaattgcaaggttcttttgggatct
gagctcattaaatcaagttcagaggaacgctctttgcttaaaaatttggggagctggctt
ggaaagttaacaattggccggaatcaggttttgagggctcgagagatagacccaaagtct
ttgattatggaggcatatgagaaggggctaatgattgctgttattccatttacgtcaaag
gtccttgaaccgtgccaaagcagtcttgcataccaacctcccaatccttggactatgggc
attttgggattgcttgttgagatttattcaatgccaaacttgaaaatgaacctaaagttt
gacatagaggttttattcaaaaatcttggtgttgatatgaaggatgtcaccccaacatcc
ctcctgaaggatcgaaaaagagaatttgaaggaaatcctgatttctctaataaagatgtg
ggggcatctcaatcacaaatgattactgatataaaatctggtcttgtacctccagtaaac
caagtggaattgccacttgaagtcaccaatccctcaaatgcgggtgctcatccacatatg
ctgtctcagtatgctggccctcttcatatgtcctcgggtgcattgatggaagatgaaaag
gtaacacctttgggattgtccgatcaacttccctctgctcaaggactgttacaagcaact
cctgccccaacaccgttttctcttggccagatgcaaccacagatacctaatattgggact
catgttattattaatcaaaagctcagtggttttggtttgcaaatgcattttcagagagcg
gtacccattgcaatggatagagctatcaaagagatagtgactagtattgtgcagcgtagt
gtttccatagcaacacaaactacaaaggagcttgttttaaaggattatgccatggaatct
gatgagacacgcatattaaatgcagcacacttaatggttgctagtcttgctgggagtttg
gctcatgttacttgcaaggagccattacgggcatcaatctccggtcaactgaggacttca
cttcagaacctaaatattgccaatgaaattttggaacaggctgtgcaacttgtaaccaac
gataatcttgatctaggttgtgctgtcattgaacaggctgctactgataaggctataagc
actattgacacagagattggtcaacaactctctttgagaaggaagcatagagagggtatg
ggttctacattttttgatgcaaatttgtatccacaaggttcaatgggtggtgttccagag
cctcttcgccccaagcctggccagttgtcactgtcacaacagcgtgtctatgaggacttt
gttcggcttccttggcaaaaccagtctagccagagctcacattctatgtctgctggtgtc
gctgctcaatctggcaatactggtcttcctagcaccaatggttctgtatctggtcaggtt
aaccctgggtaccccgtgagcacaggatatgaaggagtatctcgaccattagaagatata
acagagtctaatttggctccacattttagtgcttcctcaattcacattagagcatctgat
agtgtttcacagcatagtttggagaaagagtctgttgcttcatttccttcagcagcttcc
acccctgaattgcatgcagtggattcgtctgatgtgaaagaatccggaacttcacagtca
ctagttacatcaggtgctatggagcgccttggaagtagtttcttagagccttctctcact
acaagagacgccctagataaataccaaattgtcgcacagaagttggaagctatggtcagc
actgattccagggatgtagaaatccagggtgtcatctctgaggttcctgagatcatactt
agatgtgttagtcgagatgaggcagctttagctgtggctcaaaaggtattcaagggttta
tatgataatgcatcaaacaacatccatgtctctgctcatcttgcaattctgactgccatt
cgggatgtttgcaaacttgctgtgaaggagcttactagttgggtaatttactcagaagaa
gaaaggaaatataacaaagaaattactattgggctcattcgtagtgaattgctaaatctt
accgagtacaatgttcatatggcaaaacttattgatggaggaaggaacaaggctgcaacg
gaattttccatttcccttcttcaaaccctcgttatcgaggaacctaaagttatttcagaa
cttcacaatcttgttgatgctttggctaagcttgctacaaagcctggatgccctgagcca
ttaccacagcttcttgaaatgatcaagaatcctggtgctttatcatctagcaatgctgga
aaggaggataaggcaagacagtcaagagacattaaggttcctggtctgctacctgcaaac
agggaagagttcaacagcgtggattctattgaaccagatcctgctgggttccgggagcag
gtttccattttgttcaaagaatggtatagaatatgtgagcttcctggtgccaatgataca
gcttctacccacttcatcttgcaattgcatcagaatgggctgctgaagggtgatgatctt
acagaccgctttttccggctgttactggagcttgctgttgcgcattgcttatccactgag
atgattaattcagggtcactacaatcccaacagctacagacaatgtcatttcttgcaatt
gatatttacgcaaagcttgtcttctcaatcttgaagggatcaaacaaaccctttctttta
tccaagattctggcagttgctgtcagattcattataaaagatgcagaggagaagaaggca
tcttttaatccaagaccacttttcagattattcatcaactggcttctagatcttggttca
cttgagcctgttactgacggtgcaaatctccagattttgactgcttttgccaatgcattt
catgcattgcagcccctcaaagttcctgcgttcagttttgcatggcttgagctgataagt
cacaggagcttcatgcctaaaatgttgactggtaatggtcaaaaaggttggccttatatc
caaaggttgcttgtagacctgttccaatttatggagccttttctgaggcatgctgaactt
ggagacccggtccgtgtcctctacaaagggacactaagggtgctcttagtgctacttcat
gacttccccgagtttctatgtgactatcactttaccttttgtgatgttattcctccaagc
tgcattcagatgaggaatatcattctaagtgcatttccacggagtatgaggctgcctgat
ccatctactcctaatttgaagattgatttacttcaggaaattacccaatcaccccgcatt
ctttcagaggttgatgctgcacttaaagcaaagcagatgaaggcagatgtagatgaatac
cttaagacaaggcaacagagttctccatttttgtctgaactgaaggacaagatgcttctc
gcacccaatgaagctgcctctgctgggactcgatacaatgtgccgttaatcaactctctt
gtgctatatgttggaatgcaggcaatccatcagcttcagggtcggactccccatacacaa
tcttcagcaaatgctttccccttggccgtattttctgttggtgctgcattggatattttc
cagacactcattgtggacttggacactgaaggccgctaccttttcctaaatgccattgcc
aaccaactgcgttaccctaataccaacacacactacttttcctttatccttctttacttg
tttgcggaatcaaaccagcaggaagttatccaagaacaaatcaccagagtcttgttggaa
cgcctaattgttaaccgtcctcatccctggggcctcctcattacctttattgaactcatc
aagaatcctaggtataacttctggaaccggagtttcatcagatgtgcgccggagattgaa
aaactttttgaatctgtttcaaggtcttgtggaggtccaaaaccagtggatgataacatg
gtgtccggttgggtctga
DBGET
integrated database retrieval system
