Victivallales bacterium CCUG 44730: C5Q97_13610
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Entry
C5Q97_13610 CDS
T05502
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vbc
Victivallales bacterium CCUG 44730
Pathway
vbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5Q97_13610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbc03021
]
C5Q97_13610 (rpoB)
03400 DNA repair and recombination proteins [BR:
vbc03400
]
C5Q97_13610 (rpoB)
Enzymes [BR:
vbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5Q97_13610 (rpoB)
Transcription machinery [BR:
vbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C5Q97_13610 (rpoB)
DNA repair and recombination proteins [BR:
vbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C5Q97_13610 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AVM45680
LinkDB
All DBs
Position
3321371..3325192
Genome browser
AA seq
1273 aa
AA seq
DB search
MAKRINFGKLRDVLDVPDLIGLQVDSYRDFLQRDVPPAERKNQGLQEVFNEIFPIESFDK
QMSLEFVSYEIGNASELKGDVVDCIKDGKIYDAPLYVDFLLKVNGAEIPERVYMGDIPIM
TEQGTFIINGAERVIISQLHRSPGICFEKTRHTSGRTLYSYRIIPDRGSWMDVQFDINDF
IFIYLDRRRRRRKFYITTFLRAIGYPTNRDILSECYEVRKYTVSQLLKQKDLSGFYTIDD
ITSDDDIVVIDELVQLTENHLKQLIDAGIKEVELAYVADGDNYLIGCMRKDQVRNEEDAL
KEIYRRMRPGDPTNINNAKLLIKRLFFDNRRYDLGAVGRYKLNERLKQDIPLTQRVLDPK
DLMAATKMLIKLRHSGGQVDDIDHLGARRVRTVGELLQNQCRAGLLRTERLIRERMTFDE
QNVTPSKLINPKAFAGVIRDFFARSQLSQFMDQTNPLSELTNKRRLSALGPGGLSRDRAG
FEVRDVHPSHYGRICPIETPEGPNIGLISSMSLYAVIDEYGFLETPYRKVVDGQVTDQID
YLTADKEEQYVIAQANAPLDENGRFVRPTVMSRYKSENEEHPREEVQYMDVSPKQLVSAA
AGIIPFLEHDDANRALMGSNMQRQAVPLLMPDSPLVGTGLEARIARDSRAVVAAKADGIV
AEVVSDHIVVTPDGNLPAADAPKDSYQYYRLYKYLRSNAGTCVNQRPICFRGQAVKKGDI
LADGAATQDGELALGRNVLVAYMPWCGYNFEDAIIVSERLVKEDVYTSVHVDEFEITSRE
TKLGPEEITRDIPNVSEDALRNLDSRGVVYEGAEVVPGDILVGKITPKSETELAPEERLL
RAIFGEKAADVKDSSLTVSSGKGGIVMDIRTEYAKDPARSSMTRTEAKRQEKMIKNDYRD
IYNGLIDDLTARLSDVMLGVKLPYPIFDMSPARENAVLISSNRKVTKSSIQKLAAHYDCW
GMEDCELKKTLTGIIDTFIPQFEENEEKRRRLGDNMEYADAESGVIKRVKVYVGCKRKLQ
VGDKMAGRHGNKGIVSRIVPVEDMPFLEDGTPVDIILNPLGVPSRMNIGQVLETHLGWAA
KMLGIKVATPVFDGIPEEKIVELMKEGNDAFTAKEGQDYHWGFRKDEAGKWVYDGKADVY
DGRTGDKFDQRVTVGHVYMLKLDHLVANKIHARAVGPYSLVTQQPLGGKAQHGGQRFGEM
EVWALEAYGAAHNLQEMLTVKSDDVAGRARIYESIVKGQNVLEAGRPESFNVLLKEMQSL
GLDIRTVKKTGEH
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaagaattaattttgggaaactccgggatgttctggatgtgccggatctgatc
ggtctccaggtggattcctaccgcgactttctgcagcgggacgttccgccggccgagcgg
aagaatcaggggctccaggaggtttttaacgaaattttcccgatcgagagcttcgacaag
cagatgtcgctcgaattcgtctcctacgagatcggcaatgccagcgagcttaagggcgat
gtcgtggactgcatcaaggacggcaagatctacgatgctccgctctatgtcgattttctg
ctgaaggtcaacggcgccgagattcccgaacgcgtctatatgggcgatattccgatcatg
accgagcagggcacgttcatcatcaacggagccgagcgcgtgatcatcagccagctgcac
cgttccccgggcatctgcttcgaaaagacccggcatacgtcggggcggacgctttattcg
taccggatcattccggaccgcggctcgtggatggatgtgcagttcgacatcaacgacttc
attttcatctacctcgaccgtcgccgccgccgcaggaagttctacatcacgaccttcctg
cgcgcgatcggctatccgaccaaccgcgatatcctgtcggagtgctacgaggtcaggaag
tacacggtttcgcagctgctgaagcagaaggatctctccggcttctacacgatcgacgac
atcaccagcgatgacgacatcgtggtgatcgatgagctcgtacagctgactgaaaaccac
ctgaagcagctgatcgatgccgggatcaaggaggtcgagctcgcttatgtcgccgacggc
gacaactacctgatcggctgcatgcgcaaggaccaggtccgcaacgaggaggacgcgctg
aaggagatctaccgccgcatgcgtccgggcgacccgaccaacatcaacaatgcgaagctg
ctgatcaagcggctcttcttcgacaaccgccgttacgacctcggcgcggtcggccgttac
aaactgaacgagcggctcaagcaggatattccgctgacccagcgcgtgctcgacccgaag
gacctgatggcggcgacgaagatgctgatcaagctgcgtcactccggcggccaggtcgat
gatatcgaccacctcggcgcccgtcgtgtccgcacggtcggcgaactgcttcagaaccag
tgccgggccggcctgctgcgtaccgagcgcctgatccgcgagcgcatgacgtttgacgag
cagaatgtgacgccgtcgaagctgatcaacccgaaggcgttcgccggcgtgatccgcgac
ttcttcgcgcgcagccagctctctcagttcatggatcagaccaacccgctgtcggagctg
accaacaagcgccgtctctccgcactggggccgggcggtctttcgcgcgaccgcgccggt
ttcgaagtccgcgacgtgcatccgagccattacggccgcatctgcccgatcgagacgccg
gaaggcccgaacatcggtctgatctcctcgatgtcgctttatgcggtcatcgacgaatac
ggcttcctcgaaaccccgtaccgcaaggtggtggacgggcaggtcaccgaccagatcgac
tacctgaccgccgacaaggaggagcagtacgtcatcgcgcaggccaacgccccgctcgat
gagaacggccgttttgtccgtccgacggtcatgagccgctacaagagcgaaaacgaggag
catccgcgcgaagaggttcagtatatggacgtttcgccgaaacagctcgtcagcgccgcg
gccggcatcatcccgttccttgagcacgatgacgcgaaccgcgcgctgatggggtcgaac
atgcagcgccaggcggttccgctgctgatgccggattcaccgctggtcgggaccggcctt
gaggcgcgcattgcccgcgactcccgcgcggtggtggcggcgaaggccgacggcatcgtc
gccgaggtggtcagcgatcacatcgtcgtgacgccggacggcaatctgccggccgccgat
gcgccgaaggattcgtaccagtattaccggctttacaaatatctgcgcagcaacgcaggc
acctgcgtgaaccagcggccgatctgcttccgcggacaggccgtcaagaagggcgacatc
ctcgccgacggtgcggccacgcaggacggggagctcgcgctcggccggaacgtgctggtc
gcctacatgccgtggtgcggttacaacttcgaggacgcgatcatcgtttcggaacgtctc
gtcaaggaggacgtctacaccagcgtccatgtcgacgagttcgagatcaccagccgggag
accaagctcggcccggaagagattacccgcgacattccgaacgtcagcgaggatgcgctg
cgcaacctcgacagccgcggcgtcgtttacgagggcgccgaagtggtaccgggcgatatc
ctggtcggcaagatcacgccgaaaagcgaaaccgagctggcgccggaagagcgtctgctc
cgggcgattttcggagagaaggcggccgacgtgaaggattcgagcctgaccgtgtcgagc
ggcaagggcggcatcgtcatggacatccgcaccgagtacgccaaggacccggcccgctct
tcgatgacccggaccgaggcgaagcgtcaggagaagatgatcaagaacgattaccgcgac
atctacaacggcctgatcgacgacctgaccgcccggctttcggacgtgatgctcggcgtg
aagctgccgtatccgatcttcgatatgtcgccggcccgcgaaaatgcggtgctgatcagc
tcgaaccggaaggtcaccaagagttcgatccagaagcttgccgcgcattacgactgctgg
ggcatggaggactgcgagctcaagaagacgctgaccggaatcatcgacacgtttattccg
cagttcgaggagaacgaggaaaagcgccgccggctcggcgacaatatggagtatgcggac
gccgagtccggcgtcatcaagcgcgtcaaggtctacgtcggctgcaaacgcaagctgcag
gtcggcgacaagatggccggccgtcacggcaacaagggtatcgtgtcgcggatcgttccg
gtcgaggacatgccgttcctcgaggacggcacgccggtcgacatcatcctgaacccgctc
ggtgtgccgagccgcatgaacatcggccaggtgctcgagacgcacctcggctgggcggcc
aagatgctcggcatcaaggtggcgacgccggtcttcgacggtattccggaagagaagatc
gtagagctcatgaaggagggcaacgacgccttcaccgcgaaggaggggcaggattatcac
tggggcttccgcaaggacgaagccggcaagtgggtctacgacggcaaggccgatgtctat
gacggccgtaccggcgacaagttcgatcagcgtgtgaccgtcgggcatgtgtacatgctg
aagctcgaccacctggttgcgaataagatccacgcccgtgcggtcggtccgtattcgctg
gtcacgcagcagccgctcggcggcaaggcgcagcacggcggccagcggttcggggaaatg
gaagtgtgggcgctcgaagcttacggcgcggcccacaacctgcaggagatgctgacggtg
aagtcggatgacgtcgccggacgcgcccggatctacgagtcgatcgtgaagggccagaac
gttctggaggccggccggccggagtccttcaacgtgctgctgaaggagatgcagagcctc
gggctcgacatccgtaccgtgaagaagacgggcgaacattaa
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