Variovorax boronicumulans: CKY39_03225
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Entry
CKY39_03225 CDS
T05068
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKY39_03225 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbo03021
]
CKY39_03225 (rpoB)
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_03225 (rpoB)
Enzymes [BR:
vbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKY39_03225 (rpoB)
Transcription machinery [BR:
vbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKY39_03225 (rpoB)
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKY39_03225 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATA52340
UniProt:
A0A250DDB7
LinkDB
All DBs
Position
711074..715198
Genome browser
AA seq
1374 aa
AA seq
DB search
MAQSSAYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIAPKHRTVEGLQAA
FDAAFPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTS
QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN
FRLMDSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVP
EDFLVGRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDIQVIYTNELDQGAYIS
QTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK
VGRDESTGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGL
ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKR
RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE
TPYRRVVDSKVTMDIDYLSAIEEGKYVIAQANAVLDKDGKLTGDLVSAREAGESILVGAE
RIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVS
AVDSGTVVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVKRGDKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRY
TSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQI
IDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKF
HWFDIRPAEDDVASQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEV
HLGWAGKGIGQRIGDLLQQEAKVAELRKFMEQLYNGSGRKEELDQLSDTELLAMAANLQS
GATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLYDGRTGDQFERPVTVG
YMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQ
EMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcccaatcgtccgcgtacagttacaccgaacgcaagcgcatccgaaaaagtttcggt
aaccgcgacagcgtcgtcgaaatcccctacctgctgcagatgcagaaagacgcgtacacc
gcgttcctgcaagccggcatcgcccccaagcaccgcaccgtcgaaggcctgcaggccgcg
ttcgacgccgccttcccgatcgtctcgcacaacggtttcgtcgagatgaagttcctcgag
tacaacctggcgaagccggcgttcgacgtgcgtgagtgccagacccgtggtctgaccttc
gcctcggccgtgcgcgccaaggtgcagctcatcatctatgaccgcgagtcgtcgacctcg
cagtcgaaggtggtcaaggaagtgaaggaacaagaggtctacatgggcgaagtgccgctc
atgaccgacaagggttcgttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctg
caccgttcgcccggcgtgttcttcgaacacgacaagggcaagacgcacagctcgggcaag
ctgctgttctcggcccgcgtgattccctaccgcggttcgtggctcgacttcgagttcgac
ccgaaggacatgctgtacttccgcgtggaccgtcgccgcaagatgccggtcacgatcctg
ctgaaggccatcggcctgaacccggaatcgatcctcgcgaacttcttcgtgaacgacaac
ttccgcctgatggacagcggcgcacaaatggagttcgtctccgagcgcctgcgcggcgaa
gtcgcgcgcttcgacatcaccgacaagtcgggcaaggtcgtggtcgccaaggacaagcgc
gtcacggcgcgccacacgcgtgagctcgagcagggcggcaccacgcacatcagcgtgccg
gaagacttcctggtcggccgcgtcatcgcccgcaacatcgtcgacgccgactccggcgaa
atcctggccaaggccaacgacgaactgaccgaagcgctgctcaagaagctgcgcacggcc
ggcgtgcaggacatccaggtcatctacacgaacgaactggaccagggcgcgtacatctcg
cagacgctgcgcatcgacgaaacggtggacgagttcgccgcgcgcgtggccatctaccgc
atgatgcgccccggcgagccgccgacggaagacgcggtgcaggccctgttccagcgcctg
ttctacaacccggacacgtacgacctgtcgcgcgtgggccgcatgaagttcaacgccaag
gtcggccgcgacgaatcgaccggcccgatggtgctgaccaacgaagacatcctggccgtg
gtcaagatcctcgtggacctgcgcaacggcaacggcgaagtcgacgacatcgaccacctg
ggcaaccgccgcgtgcgttgcgtcggcgaactggccgaaaaccagtaccgcaccggcctg
gcacgtatcgagaaggccgtgaaggaacgtctgggtcaggccgagcaagagccgctgatg
ccgcacgacctgatcaacagcaagccgatctcggccgcgctgaaggaattcttcggtgcg
tcgcagctgtcgcagttcatggaccagacgaacccgctgtccgaaatcacccacaagcgc
cgcgtgtcggcccttggcccgggtggtctgacgcgtgaacgtgcaggcttcgaagtgcgc
gacgtgcacgtgacccactacggtcgcgtgtgcccgatcgaaacgcctgaaggcccgaac
atcggcctgatcaactcgctggccctgtacgcccgcctgaacgaatacggcttcatcgag
acgccgtaccgccgcgtggtcgacagcaaggtcacgatggacatcgactacctgtcggcc
atcgaagaaggcaagtacgtcatcgcccaggccaacgcggtcctggacaaggacggcaag
ctgactggcgacctggtctcggcgcgtgaagccggcgaatcgatcctggtcggtgccgag
cgcatccagtacatggacgtgtcgcctgcgcagatcgtgtcggtggctgcctcgctcgtg
ccgttcctggagcacgacgatgcgaaccgcgcgttgatgggcgccaacatgcagcgtcag
gccgtgcctgtgctgcgtcccgaaaagccgatggtcggtaccggcatcgagcgcgtctcc
gcggtcgactcgggcaccgtggtcacggccactcgtggcggtatcgtcgattacgtcgat
gcgacccgtgtcgtggtgcgcgtgaacgacgccgaagcggcagccggtgaagtcggtgtg
gacatctacaacctgatcaagtatcagcgttcgaaccagaacaccaacatccaccagcgt
ccgatcgtcaagcgcggcgacaagatcgccaagggcgacgtggtggccgacggcgcatcg
accgacctcggcgaactggccctcggccagaacatgctgatcgcgttcatgccctggaac
ggctacaacttcgaagactcgatcctgatctcggaacgcgtcgtcgccgaagaccgctac
acctcgatccacatcgaggaactggtggtgatggctcgcgacacgaagctgggcgccgaa
gaaatcacgcgcgacatcccgaacctggccgagcagcagctcaaccgcctcgacgaatcc
ggcatcatttatgtcggcgccgaagtgcagccgggcgacacgctggtgggcaaggtcacg
ccgaagggcgagaccacgctgacgccggaagagaagctgcttcgcgccatcttcggcgag
aaggcttccgacgtgaaggacacctcgctgcgcgtggaccagggctcgcaaggcaccgtg
atcgacgtgcaggtgttcacccgcgaaggcatccagcgcgacaagcgcgcccagcagatc
atcgacgatgaactcaagcgcttccgcctcgacctgaacgaccagctgcgcatcgtcgag
gccgacgcgttcgaccgtatcgagaagctcttgaccggcaaggtcgccaacggcggcccg
aacaagctggccaagggcaccaagctcgacaaggcctacctgtcgtcggtcgagaagttc
cactggttcgacatccgcccggcggaagacgacgtggcgtcgcagctcgagtcgatcaag
aactcgctcgagcagacgcgccacagcttcgacctcgcattcgaagaaaagcgcaagaag
ctcacgcagggcgacgagctgcccgcgggcgtgctcaagatggtcaaggtctacctggcc
gtcaagcgccgcctgcaacccggcgacaagatggccggccgtcacggcaacaagggtgtg
gtgtccaagatcgttccggtcgaagacatgccccacatggccgacggcacgccgtgcgac
atctgcctgaacccgctgggcgtgccctcgcggatgaacgtgggccaggtgctcgaagtg
catctgggctgggccggcaagggcatcggccagcgcatcggtgacctgctgcagcaagag
gccaaggtggccgagctgcgcaagttcatggaacagctgtacaacggctcgggccgcaag
gaagagctcgaccagctgagcgacaccgagctgctcgccatggcggcgaacctgcaaagc
ggcgcgaccttcgcgacgccggtgttcgacggcgcctcggaagaagaaatccgcggcatg
ctcaagctcgcctacccggacgacatcgccaagctcaagggcctgaccgagacgcgcacg
caggcctacctgtacgacggccgcaccggcgaccagttcgagcgtcccgtcaccgtcggc
tacatgcacttcttgaagctgcaccacttggtggacgacaagatgcacgcccgttcgacc
ggcccgtactcgctcgtcacgcagcaaccgctgggcggcaaggcgcagttcggcggccag
cgtttcggtgaaatggaagtgtgggcgctggaagcttacggcgccgcctacgtcctgcag
gaaatgctgaccgtgaagtccgacgacgtgcaaggccgtaccaaggtgtacgaaagcatc
gtcaagggcgagcactcgatcgaagccggcatgccggaatcgttcaacgtgctggtcaag
gaaattcgttcgctgggtctcgatatcgagctcgagcgttcctaa
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