Verrucomicrobia bacterium S94: EGM51_07020
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Entry
EGM51_07020 CDS
T05990
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vbs
Verrucomicrobia bacterium S94
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vbs03016
]
EGM51_07020
Enzymes [BR:
vbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EGM51_07020
Transfer RNA biogenesis [BR:
vbs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EGM51_07020
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBG47160
UniProt:
A0A4P6PBJ2
LinkDB
All DBs
Position
complement(1696487..1698325)
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AA seq
612 aa
AA seq
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MLIERAGGRQVKVRPKDIVLLHDGPIKSLGALDTEPAGNIEEAWELLQDETVSLVELAEF
IYGEETPVTVWFAWKTLQENLYFSGTVEAVSARSEAEVTETLKKRRAREEEAAGWNAYLE
RVKAGAVGPEDFEALSEVERLAYGRAVTNRTLKELGIELRPEKAHRLLLKLGIWDETVNP
YPAREGCALVEPPLEVPVLADEGREDLTALASYAIDDDNCSDPDDAISLDGDCLWVHVAD
AAALIFPDSPLDVEARVRGANLYLPETVIHMLPEPVTEALGLGLTERSPALSFKISFEDD
GTPQCEKIVPSWVAVKRLSYAEVDTRLDEAPFADMLILTEKYRARRIANGASVIDLPEVK
LSASVEGGLYKLQGEDELGLRKSVRYSVCVKQLPRLKSRDMVTDAMLMTGEAVARFLIGH
NIPAPFATQPPPDEPSTPETMAEKFMYRKKFKRSGLHLEPGLHAGLGIEPYTRVTSPLRR
YSDLLVHQQLRAFLRGGELIGESDMLSRVAQADEGGGSAARAERSSNRHWTLLHMQQQPE
KVYRGILVDKRDDRGTVLIPELAIDAKVRRVENIPLDQEIFVQLTQVDLPDLSFSCRCVE
PEPEDGAGVEVE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atcctgattgaacgcgcgggcggcaggcaggtgaaggtgcggcccaaggatatcgtgctg
ttgcacgacggaccgataaagtcgctgggagcgctggatacggaacccgccgggaacatt
gaagaggcctgggaactgctgcaggacgaaaccgtttcgcttgtggaactggcagaattt
atctatggcgaggaaacgccggtgacggtttggtttgcctggaagacgctgcaggagaat
ctctacttttcgggaacggtggaggcggtttcggcgcgctccgaagccgaggtgactgag
acgctgaagaagcgccgtgccagggaggaagaggctgccggctggaacgcgtaccttgaa
cgggtgaaagccggtgcggtcggtccggaagattttgaagcgttgtctgaagtggagcgg
ctggcctatggccgggccgtgacgaatcggacgctgaaagaactgggtattgaactccgg
ccggaaaaggcgcaccggcttcttttaaagctgggaatctgggatgagaccgtgaatccg
tatccggcgcgcgaaggctgtgcgttggtggagccgccgttggaagtgccggtgctggct
gatgaggggcgcgaggatctgactgcgctggccagttatgcgattgatgatgataactgc
agtgatccggacgatgcgatcagtctggacggtgattgtctctgggttcatgtggccgat
gcggccgcgctgatttttcccgattcgccgctggatgttgaggcgcgggtgcgcggggcg
aacctctatttgccggaaacggtgatccacatgctgcccgagccggtgacggaggctctt
gggctgggattgacggagcggtcgcctgcgctttcgtttaagatatcatttgaagatgac
ggcactccgcagtgcgaaaaaatagttccgagctgggtggccgtaaagcgcttgagttat
gccgaggtggatacgcgtctggatgaggcgccgtttgcggatatgctgatactgaccgaa
aaatacagggctcgtcggatagccaacggagcttcagtgattgatctgccggaggtgaag
ctgtctgcctcggtagagggtgggctgtataaactgcagggtgaggatgagctcggtttg
agaaaatctgtgcgttattctgtttgtgtgaagcagctgccgcgtttaaagagccgggat
atggtcactgacgccatgctgatgaccggggaggcggttgcccggtttctgattgggcat
aacattccggcgccttttgcaacgcagccgccgccggatgaaccgtcgacgcctgagact
atggcggaaaagtttatgtatcggaaaaagtttaagcgatcgggtcttcatctggagccc
ggcctgcacgcagggctggggattgagccttacacacgagtcaccagtccgctgcgtcga
tattccgacctgctggtgcatcagcagctacgcgcatttctgcgcggtggggagctgatc
ggcgaatccgatatgctgtcgcgtgtggcgcaggcggatgagggcggcggaagtgcggcg
cgggcggagcggtcgagtaaccgtcactggacgctgctgcatatgcagcagcagccggaa
aaggtgtatcgcggtattctggtggataagcgggatgaccgcggtacggtgctgattccc
gaactggccatcgatgcgaaagttcgccgcgtggagaatattccgctggaccaggaaatt
tttgttcagcttacgcaggtggatcttcccgatttatcattttcctgccggtgtgtggag
ccggagccggaagatggtgcaggggtggaggtggaatag
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