Venturia canescens: 122409091
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Entry
122409091 CDS
T09386
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122409091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122409091
Enzymes [BR:
vcan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122409091
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122409091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
DUF5743
Motif
Other DBs
NCBI-GeneID:
122409091
NCBI-ProteinID:
XP_043272275
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All DBs
Position
4:8739213..8745384
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AA seq
545 aa
AA seq
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MNVTNTNFEEVYPKIKKSLESATFVAIDAEFSGLQSADKNISYLNESLFDSPKERYTKLR
KNIEPFIAIQFGLTAFTYVKHENKYNAESFEFYLIPRPLPTKNRTFLVQAVTLQFHTFYK
FDFNELVYNAVSYLDENEETALRRSLEDYSYAWEASESGADEGRNQIEDCFNRVQQWLKS
ESEALSIEAPDFVVSYKTQKELRASFKTIWTECSGPNNFSVIKVSPEVRESLEKKNVPDK
LNKKLLDYYIGFSKVFKLISSLKKPIVGHNLFLDLMFMHKQFYLPLPENYETFKKNVNRL
FPLVYDTKFLSFEMKKILGETSWKSNVLAELYNYYKDGQGRYLAMNSPSIVLSSDSAIDS
DKCRGKFHNAAWDSYCTGYCFIRMAHICAVRKQSKDADMRILTNAEIMSGVMERANRINL
IRADLSHLRLDGPDPASTRPRWLLVRASTNDLTTQRIARAFSRFGAVDVKRFSGNEVLVA
VPNHGVSRAILNNYEGNAEFRVVPYNPLRHSSRTIKAVVWVGSLFLSGAGICAWILHRGG
SVTRG
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtaacgaatacaaatttcgaagaagtttatcccaaaataaaaaaatcgttggaa
agtgcgaccttcgttgcgattgacgctgagtttagcggtttgcaaagcgctgataagaac
atttcctacttgaacgagagtttattcgactcgccgaaggaacgttataccaaattaagg
aaaaatatcgaacccttcatagctatccaattcggtttgactgctttcacatatgtcaaa
cacgaaaacaaatacaatgcagaatcttttgaattttatctaattccaaggcccctaccg
acgaaaaacagaacttttcttgtgcaggctgtgaccctgcaattccataccttttacaaa
tttgattttaacgagttagtttacaacgctgtgtcctacttggatgagaatgaagagacc
gccttacgtcgaagcctggaggactattcttacgcttgggaggcttcggagtcgggtgcg
gatgaaggcaggaatcaaatagaagattgttttaacagagtgcagcagtggttgaagagt
gagagcgaagcattgagcatcgaagcccctgactttgttgtatcttataaaacacaaaag
gaattgcgcgccagtttcaaaactatatggacagaatgttcaggaccaaacaacttctca
gtcatcaaagtttcacctgaggttagagagagcctggagaaaaaaaatgtgcctgacaaa
ctaaacaaaaagttgttggattattatatcggattctctaaagtattcaaattaatatca
agtttgaagaaacccatcgtcggacacaatctctttctcgatctcatgtttatgcacaag
caattttatctacctcttcccgaaaattatgagacgttcaaaaaaaacgtaaatcgactc
ttccctcttgtgtacgacacaaaatttttgagtttcgaaatgaagaaaatattgggcgaa
acatcttggaaatcaaacgtgctcgccgaattgtataattactacaaagacggtcagggt
cgttatttggccatgaattctccgtctatcgttctttcgtcagattcagcgattgattca
gataaatgcagaggaaagttccacaatgccgcatgggactcttactgcacaggttattgt
tttatacgaatggcccacatttgcgctgtcagaaagcaaagcaaggatgctgatatgaga
atattgacaaacgctgagattatgtccggtgtgatggagcgagcgaatcgaattaatttg
atcagagccgatttatcgcacttgcggctggatggtccggatcctgcgtcgacgagaccc
cggtggctgttggtacgagcctcgaccaatgatttaacaactcagcggatcgctcgagcc
ttttcacgtttcggagcggtcgacgtcaagagattctcgggaaatgaagttttagtcgcc
gttccaaatcacggggtatcaagagcaatactcaataactacgagggaaacgcagaattt
cgagtagtcccgtataatccgttgaggcactcgtccagaacgatcaaggccgtcgtgtgg
gtcggaagcctattcctctctggcgctggcatctgtgcctggatccttcatcgcggcggt
agtgttacgagaggttga
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