Vibrio cyclitrophicus: FAZ90_00825
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Entry
FAZ90_00825 CDS
T06393
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FAZ90_00825 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcc03021
]
FAZ90_00825 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_00825 (rpoB)
Enzymes [BR:
vcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FAZ90_00825 (rpoB)
Transcription machinery [BR:
vcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FAZ90_00825 (rpoB)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FAZ90_00825 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF7073
Motif
Other DBs
NCBI-ProteinID:
QCI69694
LinkDB
All DBs
Position
1:164247..168275
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVEKIAAKD
YINEATGEIIVGANQEISLEALANLSQAGHKTLEVLFTNDLDHGPFMSDTLRADSTVDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIEREEEEERGTL
DESDIIEVMKKLIGIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPYRRVVDGVVT
EEVDYLSAIQEGQFVIAQANTVLTEESTFADELITARQKGESGLHPRDHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLSGGYSEAKLDTIGRKQWLEQVLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELHK
FREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNLRGGLPIATPVFDGASESLIKELLKL
GDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggattttggtactcgtccacaa
gttttggacattccatacctgttatcgatccagcttgattctttcgataaattcatcgaa
caggatccagaaggtcaatacggtcttgaagctgctttccgttctgtatttccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgttacttactcaaagccactacgcgtaaaacta
cgtttagttatctttgatcgagatgcaccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtactttcgtaattaatggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagtgat
aagggtaagacccactcatcaggtaaagttctttataacgcacgtgtaattccttaccgt
ggctcatggttagactttgagttcgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaaactacctgcatcgattattcttcgtgcacttggtaaatcgacagaagagatc
ttagatctgttcttcgacaaggtgaacttcgaagtgaaagaccaaactctacttatggag
ttggtccctgatcgtctacgtggtgaaactgcgtcattcgacatcgaagcaaatggtaaa
acttacgttgagactggtcgtcgtgttactgctcgccacatccgtcaacttgaaaaagat
ggcgttgagcacatcgaagtaccagtagagtacatcgttgaaaagattgctgcgaaagat
tacatcaacgaagcaactggcgagatcattgttggtgcaaaccaagagatcagcctagag
gctcttgctaacttatctcaagcaggtcacaagactctagaagttctgttcacgaatgac
ctagaccatggtccattcatgtcagacactctacgtgcagatagcacagtagatcgcatt
tctgcattggtagaaatctaccgcatgatgcgtcctggcgagccaccaacgaaagaagct
gcagaatcattgttcgaaagcctattcttctctgaagatcgttacgacctatcaactgta
ggccgtatgaaattcaacagctctatcgagcgtgaagaagaagaagagcgcggtactctg
gatgaatcagacatcattgaagtgatgaaaaaactgatcggcatccgtaacggtaaaggc
gaagtggacgatatcgaccaccttggtaaccgtcgtatccgttctgtaggtgaaatggca
gaaaaccaattccgtgttggtttagttcgtgtagaacgtgccgttaaagaacgtctaagt
cttggtgatcttgacgcaattatgcctcaagaccttatcaacgctaagccgatctctgct
gcagttaaagaattctttggctcttcacagctttcacagtttatggaccaaaacaaccca
ttgtcagaagttacgcacaaacgtcgtatctctgctttaggtcctggtggtcttactcgt
gagcgcgcaggcttcgaagtacgtgacgttcacgtaactcactacggtcgtctatgtccg
atcgaaacgcctgaaggtccaaacatcggtctgattaactcgctatctgcgtttgcacgt
tgtaacgattacggtttcctagaaactccgtaccgtcgtgtagtagatggtgttgtaaca
gaagaagttgattacctgtctgcaatccaggaaggtcaattcgttatcgcacaggcgaac
acggttcttactgaagaatctacgtttgcagatgagctaatcactgctcgtcaaaaaggt
gaatctggtcttcacccacgcgatcacgttgactacatggacgttgcgacaaaccaagta
gtatctatcgctgcttcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgccaacatgcaacgccaagcggtaccaacacttaaggctgataagcctctagta
ggtactggtatcgaacgtaacatcgcagttgactctggtgttacagcggttgctaaacgt
ggtggtcaagttcagtctgttgacgcttctcgtatcgtagttaaggttaacgaagatgaa
ttggtacctggcgaagctggtatcgatatctacaacctaactaagtacacgcgttcgaac
caaaacacatgtattaaccaacgtccaactgtacttcctggtgaaccagttgcacgcggc
gatgttcttgctgatggtccttcaactgaccttggtgaacttgctcttggccaaaacatg
cgtatcgcatttatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgacaatccacattcaagaactatcttgtgtggct
cgtgatactaagctgggttctgaagagatcacagctgatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacattggtgctgaagttaagggtggc
gacatcctagttggtaaagtaacccctaaaggtgaaactcaactgactcctgaagagaag
ctactacgtgctatcttcggtgagaaagcatctgatgttaaagatacttctctacgtgta
ccaaactctgtttcaggtactatcatcgatgtacaagtcttcactcgcgatggcgtagag
aaagacaaacgtgcacttgaaatcgaacagatgcagcttaaagaagctaagaaagaccta
actgaagagttccaaattctcgagggcggccttcttaaccgtgttaaagctgtacttctg
tctggtggttactctgaagctaagcttgatactatcggtcgtaagcaatggctagagcaa
gttctagaagacgatgcgctacaaacacagcttgagcaacttgctgagcagtgggatgag
ctaaaagctgacttcgataagaagtttgaaactaagcgtcgtaaaatcactcaaggtgat
gatctagcgcctggcgttcttaagattgtgaaagtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggccggtcgtcacggtaacaaaggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaaccca
ctgggtgtaccatcgcgtatgaacatcggtcagatcctagaagtacacttaggtttggct
gcgaaaggtatcggtgacaagatcaaccaaatggttaaggaacaacaagagctgcataag
ttccgtgagttcctacagaaggtttatgatcttggtgatactcgtcagaaagttgatatt
gctgaactgtctgatgatcaagttcgtacactgattaagaacttacgtggcggtctaccg
attgctacccctgtgttcgacggtgcttctgagtctctaatcaaagagctattaaaactg
ggtgatctgccagaatctggtcagcttaaactgtttgatggtcgtactggtgattcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccacttggttgatgac
aagatgcatgctcgttcaactggttcttacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcatatactctacaagaaatgctaacagttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgtagacggtaaccatagcatggaacctggtatgccagag
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
