Vanessa cardui (painted lady): 124538570
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Entry
124538570 CDS
T09161
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124538570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124538570
Enzymes [BR:
vcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
124538570
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124538570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
AAA_16
RsgA_GTPase
AAA_21
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
124538570
NCBI-ProteinID:
XP_046971621
LinkDB
All DBs
Position
20:1551181..1557713
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLEPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYIAKETPMVVYLNVHAALEQQRVAAEQENTRGPVTMVVGPGDV
GKSTLTRILLNYAVRMGRRPIFVELDVGQGHISVPGTVGALLVERPASIEEGFSQQAPLV
YHFGHKSPGENLELYNTIVSRLAEVIAERCENNKKASTSGVIINTCGWVKGAGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSSTQRAEARDARIREYF
YGKRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGMRAEDALTKLVSVWPAPALAHRL
LAVSFAAGPDDHVLHCNLAGFVCVTAVDPERQTLTILSPQPRPLPATVLLLSDLQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagttcaactacaagaatttaaattagaacctgactcggaattacgttttgaa
gtagaatctaaaaacgaaaaagttgttttagaggttaaaagcggttacgccgagttgttt
ggtacggagttggtcaagggaaagccttatgagttccatacgggcgctaaagtggcggtg
ttcacgtggcatggatgcacagtcgagctccgaggtcgtactgaagtcagttatatcgct
aaggaaactccaatggtagtctatctgaatgttcatgcagcactggaacaacagagagtg
gcagcagaacaggagaatacaagaggccctgtcaccatggtggtggggccgggtgatgta
ggaaaatcaacactgactaggatactattgaattatgcagtaagaatgggaagacgacca
atatttgtggagttagatgttggtcaagggcacataagtgttcctggaactgtgggtgcc
ctgttagttgagcgaccagcgtctatagaagaaggcttcagtcagcaagcaccgctagtc
taccactttggtcacaaatcacccggagagaatcttgaactttataatacaatcgtctca
aggctagctgaagtgattgctgaacggtgcgaaaataataagaaagcatcaacatcgggt
gtaattataaacacatgtggatgggtcaaaggagctggatacaaggttttgacacatgct
gcacaggcatttgaggtggatgtcattttagtattagataacgaaagactgtacaatgaa
ttgaagagggatatgccaaagtttgtcaaagttgtttacctaccaaaaagtggaggggtg
gtagagcggtcgtctacacagcgagctgaggcaagggacgctcggattcgggagtatttc
tatgggaagcgaacgccgtactacccgcactcgtttgacgttaagttctccgatttgaag
atatataaggtgggcgcgccgtcgctgcccgactcgtgcatgccgctgggcatgcgcgcg
gaggacgcgctgacgaagctggtgagcgtgtggccggcgccggcgctggcgcaccgcctg
ctggccgtgtcgttcgcggcggggcccgacgaccacgtgctgcactgcaacctcgccggc
ttcgtctgcgtcacggcggtggacccggagcgccagacgctgaccatcctgtcgccgcag
ccgcgcccgctgccggccaccgtcttgctgctatctgacctgcaatacatggacaaccac
taa
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