Vanessa cardui (painted lady): 124542877
Help
Entry
124542877 CDS
T09161
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124542877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124542877
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124542877
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124542877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124542877
NCBI-ProteinID:
XP_046976722
LinkDB
All DBs
Position
Z:complement(13792459..13812401)
Genome browser
AA seq
2435 aa
AA seq
DB search
MNLDPLTFSLSQINYLVANLSKKNFKQTSQELSQIVSLYGLEAENQLLRCLLTEAAKTSW
DNDRPGTAFSVHATLLAQHLASLLNHPAKSTVVCRTLDHPTRSLQKVLKPANTLLTRLAR
LLKLTTAQDVAFSLVLRRNSSKPEIVSLAKNHLKKRFLDFVQCYLDAERGHQVERAGLQE
CSPEVLQTLLTSLAYDNFRLAAVTKDLFLKRLRIDFPREVVPIVLAPLLYPDDTQTPLEE
MTTSDDMAAAMMDNSLAEIIRDIGYTFTASVEDCKNNMINFGAREPTAIDIARIISMMVR
YHATLPEGPQIQTPGNYWMNHEAKKEAIAHGHPETWNVEIFVQTLKELASNLNWKEVILQ
LDHQEFIVPDRQGLSLLFTILRLGLQSAGYPANIFPVEYLCRRWTNLEGQMSLITNILKH
PDIFSFADHPFHPVSIDLLKSPPETDNKEISTWRCLYLVELLLYASERGYYMQVHELFKF
PLQHCPDILILALLQINPPVTVFRQELLTMLIPIFLGNHPNSGIILQHAWHSQNPNIKPI
IMHAMADWYIRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKLD
KWLTDKIRDHGETFVSAMVKFLQRRCPQVLGKVPDEQLPKAAQLPPETIGTMLACLQLCI
PNVQQELQEAIYNVIANCQTLILSKARPGIPGIARPHTRVLETPFNPAGLGGQLFTPHVD
AIANLTPNVANMTLGAPANTAFAMPGTLGPLVTAPASPSRLMGAGPNSPFAMMQMQHNPN
VANMSALARMPPVPAMDKPRLPDPIHFPEIMHNVSKEIEDEANSYFQRIYNHPPHPTLSI
DEVLEMLKKFQDSSNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLV
PSYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFP
PHLVEYIEYGLQSQEPPTKPQGAVLPASLAAMLNQSAVVTVSAPYRAVVCVHNPISVISK
VTNCAAGGIGSRPSIANATNIDTLLTATDRDEKINAPPEAIQDKTAFIFNNLSQLNLQTK
CEELKEIITDEYYQWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIR
VLLRSDKGIANFSDRSLLKNLGHWLGMLTLARNQPILYVDLDLKALLLEAYHKGQQELLY
VVPFVAKVLESCAKSVVFRPPNPWSMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDI
TDLKPSLYLKDPEKLRTIEFQLSQPKPNKEPANVIPVNQAVVQAPQIQMMPPQPPMIPIE
DMSGTVPTPTSGMIPNDPSMMGVLGLPEPRFNYLDVNVSSTSAFGQKICFNPHIILFQNY
PHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFAFDPDEVRMRTCAHHMMR
NLTAGMAMITCREQIISTISTNLKAAFITALIPTTPQQLNVLQKDIIESAAAVLATENME
LACAFIQKTAVEKALPELDKRLMNDYEMRKIARQEGRRYYDPMVLTYQTERIPERVRLRV
GGPTDLQISVYEEFACNIPGFMPVRDAGMFIPKPSAQEQIPQMTFSQVMNPTQVYGTDEM
GTLITTAELFLSNALTVPLFAVQATNTHTLLECLIIARRNRDIVSGYTLLQRAVEGLLDG
HIVQPGTNPEHAEMMTRYRDIHLRVLKLLEDARVYGHAWTTKQITYCVTECRDELRYNLE
AIDCLVRNHLINLPQYDLALAHLMDNGNNYLAVAFAMQLVQLYLVDDRNNLYATESDLYH
TTETLVRMMSHSRQPPPEGLATLIETIRINQDPSTYLGERSPLGPTAHIHNGILQVRARD
YEDPPGLQEKTENLLREWRNVLLSPLTEIEIGQNFNIYVHRMNMNGILKSDDMITRFFRI
ATQMCIENVYQLLTEDRMNPPPVPPKREKYYAICDSFIKLVSLLIKNTADGGNPTPKLNL
LNKILGIIAGCLLQDHEEHGANFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLTAFCHT
LRIIRPSVAPGFCYAWLEIVAHRAFVNRVLAVTPQQKGWGMYSTLLIDLFKFLDPFLRNT
ELATPVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRL
PDPFTPNLKVDLLAEITLPPRAVINYATIIPSSQFKKDLDAYIKARAPVTFLSELRSNMQ
VVNEPGRRYNSQLMNAVVLYVGTQAIAHIRSKGQTPNMSTIAHSAHMDIFQNFTVDFDYE
GRYLFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWG
LLITFIELIKNPIYKFWSHEFVHCAPEIEKLPRGAAKRGAPATATFHFSTCKTRLTMEQI
IQKVNSILNPCPHSAPPDETDGKQCDKVISDSVNQ
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaccctttaacgtttagcttatcacaaatcaattatctcgttgcaaattta
agtaagaagaatttcaagcaaactagtcaagagttgtcccagattgtcagtctctatggc
ttggaagcagagaatcaactgctgaggtgtctgcttactgaggcggcgaagacatcgtgg
gacaacgaccgtccagggactgcgttcagtgttcacgcgactctactagcgcagcatctg
gcgtcgcttctgaatcatcctgcaaagtctactgtggtctgtcggacactagatcatcca
acacgatcactacaaaaggtattaaaacctgccaacacactccttactcgactcgcaaga
ttgctgaaattgactacggcccaagatgttgctttctcattggtgttgagaagaaattca
tcaaagcctgagattgtttctcttgctaaaaaccacttgaagaaacggtttttagacttt
gttcagtgctatcttgacgcagaacgcggacatcaagttgagcgtgcaggtcttcaggaa
tgcagccctgaagttttgcaaactctcttaactagcctcgcttacgacaattttcggcta
gccgcagttactaaggacctatttttgaaacgtttacgcattgactttccacgtgaagta
gtgcctatagtgttagcgccgctactttaccctgacgatacacaaacacccctcgaggaa
atgaccacatctgacgacatggcagcagctatgatggacaactcactagcggaaataatt
cgagatattggctatacatttacagcttcagtagaagactgcaaaaacaacatgattaat
ttcggagcgcgggagccaacggctatcgacatagctagaataatttcaatgatggtgaga
taccatgccacactaccagaaggcccgcaaatccaaacgcctggaaattattggatgaac
cacgaagcgaagaaagaagccattgcgcatggacacccagagacatggaatgttgaaatt
tttgtacaaacattaaaagagttagcttctaatttaaactggaaagaggtcattttacaa
ctagaccatcaagaatttattgttcctgacagacaaggtttaagtttactcttcacgatt
ttgcgattaggtcttcagagcgccggttatccagccaacatatttcccgtagaatatcta
tgtcgaagatggacaaatttagaaggtcaaatgagcttgatcactaatatcctcaaacac
ccagacatatttagttttgcagatcatcccttccatccagtttcgattgatctgttaaaa
tccccacctgaaactgataataaggaaatatcgacatggcgctgtctttacttggtggaa
cttttactgtacgcatcagaacgtggctactacatgcaagttcacgaattatttaagttt
cctcttcaacactgtcctgatattttaattcttgctctattacaaataaacccaccagta
acagtattcagacaggaattattaacaatgctcattccaatttttcttggcaaccatcct
aattcaggtataattttacaacacgcgtggcattcacaaaatcctaatataaagccaata
attatgcacgctatggccgattggtacattcgcggcgaaagcgatcaatcaaaactatcg
agaatattggatgtcgcacaagatctgaaggcattgtccttgctgttgaatgtccagtct
tttccgtttgtcatagatttagcgtgcttagcatcccgaagagagtatttgaaattggac
aaatggctgacggataaaatacgtgatcatggtgagactttcgtttcagcgatggttaag
tttcttcagcgacgatgcccgcaagtactcggcaaagtgccagacgagcaactgcctaaa
gccgctcagttgcccccagaaactattggcacaatgttggcatgcttgcaattatgtatt
cctaatgtacagcaagagctacaggaagcgatttataatgttatagctaattgtcagaca
ttgatattgagcaaagcaagaccaggtataccgggcattgcccgtccgcatacaagagta
ttagagacaccttttaaccctgctggtttgggtggacagctgttcacgccacacgtagat
gctattgctaatttaacaccaaacgtcgccaatatgactttaggtgcaccagcaaatact
gcttttgccatgcctggcacactagggccattggttacagctccagcatcgccatcgaga
ctcatgggtgcagggccaaacagtccttttgcgatgatgcaaatgcagcataaccctaat
gtcgctaatatgtctgctcttgccagaatgcctcctgtacccgcaatggacaaacctcgt
ttaccggatcctattcacttcccagaaattatgcataatgtgtccaaggaaatcgaagat
gaagctaacagctacttccaaaggatatacaatcatcctccacatccgactctgtcgata
gacgaggtattagaaatgttaaagaagttccaagactcatcaaataaaagagaacgagag
gtgttttcttgcatgctccgaaaccttttcgaagaatacaagtttttcccgcaataccca
gacaaagaactacatattacagcgcaattatttggtggtataatagaaaagggtctagtt
cctagctacgtatcgttagggctagctttaagatttgtcttagatgctttacgtaagccg
gaaggttctaaaatgtactacttcggtatagctgctctagatagattcaaatctcgttta
aaggactatcataaatattgtgaacacgttagagctatacctcattttagtgaattccct
ccgcacttagtcgaatacatcgaatatggccttcagagccaagagccacctactaagccg
caaggagcagtgttgccagcaagtcttgccgccatgctgaatcagagcgccgttgtaacc
gtttcagcaccatacagggcagtcgtttgtgtacataatcccatctcggttatatcgaag
gttacaaattgcgctgccggtggtattggcagtcgaccgtctatagcgaacgctacaaat
attgacacactgctaactgctacggacagagatgaaaagattaacgctccaccagaagca
attcaagataagactgcatttatattcaacaatctcagccagctaaacctgcaaactaaa
tgcgaagaattgaaggaaataataacagacgaatattatcaatggctttctcagtatcta
gtaatgaagagagcttcgattgagctaaattttcacgctctgtattcaaattttctcgac
gttctcaaaataagggaaataaataagatggttacgaaagaaacttaccgaaatattaga
gtattactgcgatctgataaaggcatagcgaacttctctgaccgatctttgttgaaaaat
ctcggtcattggttaggtatgctcactttagctcgcaaccagcctatcctttatgtagat
cttgatcttaaagcactgctacttgaagcttatcacaagggccagcaggagcttctttac
gtcgtgccgtttgttgcgaaggtcttggaatcctgcgccaagagcgtcgtattcagaccg
ccgaatccatggtctatggctctaatgaacgttttggccgagctacatcaagaacctgat
ttgaaattgaatttaaagtttgaaatagaagtgctttgcaaaaacttaagtttggatata
actgatttaaaaccatctctatatttaaaggatccagaaaaattaaggactatcgaattc
caactctcacaacccaaacccaataaagagccagctaatgtaataccggttaaccaggcc
gtagttcaggctccacaaatacaaatgatgcctcctcaaccgccgatgattcctatcgaa
gacatgtccggtactgtgcccacacctacgagtggtatgattcccaatgatccgagcatg
atgggtgttctgggattgccggagccaagattcaactatcttgatgtgaatgtctcatca
acttcagctttcggtcagaaaatatgtttcaatccgcatataattctcttccaaaactat
cctcatttgaagcagtttgtgaaacctgctatcgagaggtcgattcaggaatggattcat
ccagttgtcgatcggtctatcaagtatgccttgacgacttgcgagcagattataaggaag
gactttgcgtttgaccctgacgaggtgcgcatgcgcacgtgcgctcatcacatgatgcgg
aatcttaccgccgggatggctatgatcacttgccgcgaacagatcatcagcacgataagc
actaacttgaaagctgcttttatcactgccctgataccaaccactcctcaacagttgaat
gtgttacagaaggatatcatagaaagtgcagcagcagttcttgctacagaaaatatggag
ctcgcttgcgctttcatacaaaagacggccgtcgaaaaggcattacctgaactcgataag
aggctaatgaacgactacgaaatgagaaaaatcgcccgacaggaagggcgcagatactac
gacccgatggtattgacttaccaaactgaacgcatacccgagagggtgcgactgcgtgtc
ggcggtcccacagacctgcagatttcagtttatgaagagtttgcgtgtaacatccctggg
tttatgcccgttcgtgatgcgggaatgtttattcctaagccctcagcgcaggagcaaata
ccgcagatgacatttagccaagtaatgaatccgacacaagtgtacggtactgatgaaatg
ggcactcttataacaacagcggaactgttcctgtccaatgcgttgacggttccattattc
gcggtccaggcgaccaacactcatactttgctggagtgtcttatcatagcgagacgtaac
cgggacatcgtatctggctacacactgttgcaacgagctgttgaaggtctccttgatggc
cacattgtccaacctgggacaaaccctgaacatgcggagatgatgactcgctaccgtgac
attcaccttcgagtcctgaaactgttggaagatgctagagtttatggtcatgcctggacc
accaaacaaataacgtactgcgtcaccgaatgtcgggatgagttgcgttataatctggaa
gcgatagattgccttgtcaggaatcatcttatcaatttgccacagtacgatcttgctctg
gcacatcttatggataacgggaacaactatttggctgttgcctttgccatgcagctggta
caactctacctcgttgacgataggaacaatttgtacgctactgaatcagacttgtaccac
actacggagactctcgtgaggatgatgtcccactccagacagccgccaccagagggccta
gcgaccctcatcgaaacgatcagaattaaccaggatccaagcacatatcttggtgaacgt
tctccattgggaccaactgcccatattcataatggaatcctgcaagtacgagcccgagat
tacgaagatccacccggtctccaagagaagactgaaaatctccttcgtgaatggaggaac
gtactcctgagtccgctcacagaaatcgagatcggacagaacttcaacatttacgttcac
cgaatgaacatgaacggtatactcaagtcagacgacatgatcacccgcttcttccgtatc
gcaacacagatgtgcatcgagaatgtgtaccagctgctaaccgaggataggatgaaccca
ccaccggtgcctccgaagagggagaagtactacgctatatgcgactccttcatcaagctc
gtgtcacttttgatcaagaatactgcggatggtggcaaccctacaccaaagcttaatttg
cttaataagatcctgggcatcatcgctgggtgtctactccaggaccatgaagagcatggc
gccaacttccaacagctcccttaccaccgtctattgctcatactgttccttgatatgaac
atggccgagccagtcttagaatctatgaactatcaggttctaacagcattctgccacacc
ctccgcataatccgtccgagcgtggcaccgggtttctgctatgcctggctggaaattgtg
gcgcacagggctttcgtcaacagggtgttagccgtcacaccgcaacagaagggctgggga
atgtattcgacgctgcttatcgaccttttcaagttcctcgatccgttcctacgtaacacg
gaactggcgacgcccgttatgatgctatacaaaggaaccctcaaagtcttactcgtttta
ctccacgattttcccgagtttctgtgcgactaccactatggcttctgtgatgagataccg
ccaaattgcatccaaatgaggaatctcatcctgtcagccttcccgaggaacatgcggcta
cccgatcctttcacgccgaatttgaaagtggatctgttggccgaaatcacgctaccccct
cgtgcagttataaactacgctacgattataccgtcgtcgcagtttaagaaggatctggac
gcgtatatcaaggccagagcgccagtcacgttcctatcggagctgcgtagtaacatgcag
gtggtgaatgagccaggccgcagatacaacagccagctgatgaatgccgtggtgctgtac
gtcggcactcaggctatcgctcacattagatcgaaggggcagaccccgaacatgtcaacc
atagcccattcagcgcacatggatattttccaaaacttcaccgtagactttgactacgaa
gggaggtacctattcctgaacgcgatcgcaaaccagctacgctatccgaatagccacact
cattacttcagctgttgcctgctgtacttgttcgcggaggcgaactctgaggctgtacag
gagcagattacgaggatgctgctagagaggttgatagtcaaccgacctcacccgtggggt
ctcctgatcacattcatcgaacttattaagaacccgatctacaagttctggagccacgag
ttcgtacattgcgcgcctgagattgaaaagcttccaagaggggcagcaaagagaggcgcc
ccagcaaccgcaaccttccacttctcaacctgtaaaacacgtcttacaatggaacaaatt
attcaaaaagtaaattcaatactaaatccttgcccacactcggctccgccggatgaaacg
gacggtaaacagtgtgataaagtgattagtgacagtgtgaatcaataa
DBGET
integrated database retrieval system
