Vibrio cholerae O1 2010EL-1786: Vch1786_I2649
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Entry
Vch1786_I2649 CDS
T01650
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce02024
Quorum sensing
vce03018
RNA degradation
vce05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vch1786_I2649 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vch1786_I2649 (hfq)
05111 Biofilm formation - Vibrio cholerae
Vch1786_I2649 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vce03019
]
Vch1786_I2649 (hfq)
03036 Chromosome and associated proteins [BR:
vce03036
]
Vch1786_I2649 (hfq)
Messenger RNA biogenesis [BR:
vce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Vch1786_I2649 (hfq)
Chromosome and associated proteins [BR:
vce03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
Vch1786_I2649 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AET28194
LinkDB
All DBs
Position
1:2794158..2794421
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AA seq
87 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPASDRPAEKSEE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctctacaagacccatttctgaatgcactacgtcgtgaacgtatc
cctgtttctatctaccttgtgaacggcattaaactgcaaggtcagatcgaatcatttgat
caatttgtgatcttgctgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtccagttagccaccacagcggcgaccgcccagcatcggatcgt
ccagcagagaagtctgaagagtaa
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