KEGG   Vibrio cholerae O1 2010EL-1786: Vch1786_I2649
Entry
Vch1786_I2649     CDS       T01650                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
vce  Vibrio cholerae O1 2010EL-1786
Pathway
vce02024  Quorum sensing
vce03018  RNA degradation
vce05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Vch1786_I2649 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Vch1786_I2649 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    Vch1786_I2649 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vce03019]
    Vch1786_I2649 (hfq)
   03036 Chromosome and associated proteins [BR:vce03036]
    Vch1786_I2649 (hfq)
Messenger RNA biogenesis [BR:vce03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Vch1786_I2649 (hfq)
Chromosome and associated proteins [BR:vce03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Vch1786_I2649 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AET28194
LinkDB
Position
1:2794158..2794421
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPASDRPAEKSEE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccatttctgaatgcactacgtcgtgaacgtatc
cctgtttctatctaccttgtgaacggcattaaactgcaaggtcagatcgaatcatttgat
caatttgtgatcttgctgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtccagttagccaccacagcggcgaccgcccagcatcggatcgt
ccagcagagaagtctgaagagtaa

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