Vibrio cholerae O1 El Tor FJ147: IR04_16365
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Entry
IR04_16365 CDS
T03827
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03030
DNA replication
vcf03430
Mismatch repair
vcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IR04_16365 (dnaE)
03430 Mismatch repair
IR04_16365 (dnaE)
03440 Homologous recombination
IR04_16365 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcf03032
]
IR04_16365 (dnaE)
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_16365 (dnaE)
Enzymes [BR:
vcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IR04_16365 (dnaE)
DNA replication proteins [BR:
vcf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IR04_16365 (dnaE)
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IR04_16365 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AKA00663
LinkDB
All DBs
Position
I:complement(2481026..2484505)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW
LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES
YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL
RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL
EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA
LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL
QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG
VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA
SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY
LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA
RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT
LLDELKQLLGHDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccaaagttcatccacttacgtatacacagtgatttctctatggtggatggt
ttgtccaaagtcccgccattggtgaaaaaagtggcggcaatgggcatgcccgcaatggcc
ttgaccgatttcaccaacctgtgtggcttggtgaagttttacagcaccgcgcataactgc
ggggttaagccaatcattggcgccgactttactttgcaatcggaagagttcggtgatgag
ctgaccaaactgaccttgcttgctaaaaacaatgtcggttacaaaaacctcaccttattg
atttctaaagcctatttacgcggccatgtccagcatcaacctgtgattgataaagcgtgg
ttggtcgagcatgccgaagggctgattgtgctctcgggaggcaaaagtggcgaagtgggg
cgcgcattactcaaaggcaaccaacaacaagtagaaagatgcattgagttttaccaaact
cactttgccgatcatttctatctagagcttatccgcactggccgtgctgatgaagagagc
tacttacattttgcgctggatgtggcagagcagtacgacttgcccgtcgtggcaaccaac
gaagtggtgttcatcactgaagagtcgtttgaagcccacgaaatccgagtcgcgattcac
gatggttatacgctggaagatccacgccgtccgaaaaattacagtccgaagcagtatctg
cgcagcgaagcggagatgtgtgagctgtttgcagacattccagaagcgttagccaacagt
gtcgagattgccaaacgttgtaacgtgaccgtacgtttgggcgaatatttcctacctaac
ttcccaacgggcgggatggcgattgaagattttctggtgatgaaatctcgcgaagggttg
gaagagcgactcgaatttcttttcccagatccagaagttcgtgccaagcgtcgccctgaa
tatgatgagcgtttgcaagttgagctcgatgtgattaaccagatgggctttcccggatac
ttcttgatcgtgatggagtttatccagtggtcaaaagataacgatattccagtcggtccg
ggacggggctcgggggcgggctcattggtagcgtatgcactgaaaatcaccgaccttgat
ccgctggaatacgatctgctgttcgagcgtttcttgaatccagagcgggtctccatgccc
gacttcgacgtcgatttctgtatggataagcgtgatcaagtaattgatcacgtagcggaa
atgtatggtcgtgatgcggtatcacaaatcatcactttcggtaccatggcggcgaaagcg
gttattcgcgatgtggggcgtgtacttggtcatccgttcggttttgtcgatcgcatttcc
aaattagtgccacccgatccgggtatgacgctcgagaaagcctttatcgccgagcctgca
ctgcaagagctgtatgacgcggatgaggaagtcaaagagctgatcgacaagtgtcgaatt
ctggaaggctgtacccgtaacgctggtaaacacgctgggggcgtggtgatttcgcccact
gccatcactgactttgcgccgatttactgtgatgcggaaggcaacttcccggttactcag
ttcgataagaacgatgtggaaactgccggtctggtcaaatttgacttcttggggctgcgt
acccttaccattattgactgggctttgggcttagtgaacccgcgtttgaaaaaggcgggc
aaaccccccgtgcggattgaagcgatcccgctcgacgatgcgcgctctttccgtaacctg
caagatgccaaaaccaccgcggtattccagctcgaatcgcgcggtatgaaagagctgatt
aagcgactgcaacccgactgttttgaagacatcatcgctctggtggcgctgtttcgtccg
gggccgttgcaatccggcatggtggataactttatcgaccgtaagcatggccgagaagcc
atctcttatccggatgaaaagtggcaacatgaatcgctcaaagagatcctagaaccgacc
tacggcatcatcctctatcaggagcaggtgatgcagatcgcgcaggtactgtcgggttac
accttgggtggggcagacatgctgcgccgtgcaatgggtaagaaaaagccagaagaaatg
gctaagcagcgcgctgtgttccaagaaggggcggagaaaaatggcgtcgatggtgagttg
gcgatgaaaatcttcgatctggtggaaaaattcgccggatacggatttaacaaatcgcac
tctgccgcttatgcgctggtttcctaccaaaccttatggttgaaaacccactatccagcc
gagtttatggcggcggtaatgaccgcggatatggacaacacggaaaaagtggttggccta
gtggatgagtgtaaaaacatgggattgaccgtgttgccaccggacattaactcgggtctt
tatcgctttaacgtcgatgacaacggcgcgattgtttatggtattggcgcaattaaaggg
gtgggtgaaggtccgattgaagcgattttggaagcgcgcaacaaagggggatatttcaaa
gatctgtttgatttctgcgcgcggattgatctgaaaaaggtcaacaaacgggtaattgaa
aaactgatcttggctggcgccctggatagattaggcccgcatcgcgcagccatgatggcc
tcagtggatgatgcggtgcgtgcagcaagccaacatcaccaagcggaagcgtttggacaa
gcggatatgttcggtgtgctcacggatgcgccagaagaagtcgagcagaaatacacgcaa
gtgccagaatggccagaaaaagtgcgtttggaaggggagcgcgagacgcttgggctctat
ctcaccggccatccggtggatgaatacctgaaagagctcaccaaatacaccagttgccgt
ttgaatgaagccgcaccaacccggcgtgatcaatccttaaccgttgccggattggtgatt
gcagcgcgggtgatgaccaccaaacgtggcacgcgaattggtttaatgactttagatgac
cgctcgggccgtatggaagtgatgctttactcggaagcactcgatcggtatgcagaatgg
ttagaaaaagataaaattctggtggtttccggacaggtcagctttgatgacttcaatggc
ggacttaaaatgtcggcgcgcgaggtcatggacttgggcagcgcgcgtgaaaaatttgcc
cgcggtttatcgatctcgattttacagtcgcagattgatcaacaattttttgagcgtttt
agtcacatactggaacctcaccgcgcaggaaccgtacctgtcaatgtatactaccagcgc
cctgatgcgcgagcgcgcctgacgttaggcacagagtggcgagtcacgccaagcgataca
ttgttagacgaattaaagcagctacttggtcatgatcaggtagaactcgaatttaactaa
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