Vibrio cholerae O1 MJ-1236: VCD_001296
Help
Entry
VCD_001296 CDS
T00903
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VCD_001296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcj03021
]
VCD_001296
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_001296
Enzymes [BR:
vcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VCD_001296
Transcription machinery [BR:
vcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VCD_001296
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VCD_001296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF6155
Motif
Other DBs
NCBI-ProteinID:
ACQ59469
LinkDB
All DBs
Position
1:complement(295842..299867)
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME
LVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKD
YVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTL
DEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVVT
DEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDE
LKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAK
LREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLEL
ADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
SFNVLLKEIRSLGINIELEDE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgaaaagttcatcgaa
caggatcctgaaggacaatacggtcttgaagccgcttttcgttctgtatttccaattcag
agctataacggcaattcagagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgtggtgtaacttattcaaaaccgctacgcgtgaaatta
cgcttagtgatctttgataaagacgcgccagcaggtactgtcaaagatattaaagaacaa
gaagtctacatgggcgaaattccgctcatgacagaaaatggtaccttcgtaatcaatggt
actgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaagacccactcttcaggtaaagttctgtataacgcacgtatcattccgtaccgt
ggttcatggctcgattttgagttcgatccaaaagacaacctgtacgtacgtattgaccgt
cgtcgtaagctgcctgcatcgatcatcctgcgtgcactaggtaaaactagcgccgagatc
ctggacatcttcttcgaaaaagtgaatttcgaagtgaaagatcaaactctaatgatggag
ttggttccagagcgtctgcgtggtgaaactgcgaccttcgatatcgaagcggatggcaag
gtttacgtagagaaaggccgtcgtgtgactgcacgtcacatccgtcaacttgaaaaagat
ggcgtgaactttattgaagttccggttgagtacatcgtaggtaaagtatctgcgaaagat
tacgtgaatgaagcgactggcgaactgatcattaccgcgaaccaggaaatcagcctggaa
gcgctagcgaacctgtctcaagccggttacaaaaagctagaagttctatttaccaatgat
ctggaccacggtccgttcatgtcagaaaccctgcgtgttgatagcacgacagatcgcatc
tctgcactggtagaaatctaccgcatgatgcgccctggcgagccaccaacgaaagaagcc
gcggaatcgctgtttgaaagtctattcttctctgcagagcgttacgatctgtcgactgtt
ggccgtatgaagttcaacagctcaatcggtcgtgaagatgcggaagagcaaggcacgctg
gacgaagttgacatcatcgaagtgatgaaaaagctgatctcgattcgtaacggtaaaggc
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgtagtgtcggcgaaatggca
gagaaccaattccgtgttggtctggtacgtgttgaacgcgcagtgaaagaacgcctaagc
ttgggcgatctggacaacgtgatgccacaagacctgatcaacgcgaaaccaatttctgct
gctgtaaaagaattctttggttcttctcagctgtctcagtttatggatcagaacaacccg
ttgtcagaagtgacgcataagcgtcgtatttctgcattgggccctggcggtctgactcgt
gagcgtgctggcttcgaagtacgtgacgtacacgtaacgcactacggtcgtctatgtcct
atcgaaacacctgaaggtccaaacatcggtttgatcaactcgctgtctgcgtttgcacgc
tgcaacgagtacggtttcctagaaaccccttaccgtcgcgtagtcaacggtgttgtgact
gacgaagtggattacctctctgcgattgaagaaggtcaattcgttatcgctcaggcgaac
gctaagctgacagaagaaggcggttttgctgatgaactggttaccgcacgtcaaaaaggc
gagtcaggtcttcacccacgtgaacacgttgactacatggacgttgcgacaaaccaagtt
gtatcgatcgcggcatccttgatcccgttcctagaacacgacgatgcgaaccgtgctttg
atgggtgcgaacatgcaacgtcaggcggttccaactctgcgttcagagaaaccactggtt
ggtacgggtatcgagcgtaacgtagcggttgactctggtgtaacagcggtggcgaaacgt
ggcggtgttatccagtcagttgatgcttctcgtatcgtagtcaaagtgaacgaagaagag
ttgatccctggcgaagcgggtatcgacatctacaacctgactaagtacacccgttcgaac
cagaatacttgtatcaaccagcgtccatgtgtgatgccgggtgaacctgtagctcgtggc
gatgtactggcagacggtccttcaactgaccttggcgaactggctcttggccaaaacatg
cgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttagtgtctgag
cgcgtagttcaagacgaccgctttactactatccacatccaagagctttcttgtgtggcg
cgtgatactaagctgggcgcagaagagatcacggctgacatccctaacgtgggtgaagcg
gctctgtctaagcttgacgaatctggcatcgtgtacatcggtgcagaagtgaaaggcggc
gacattctggttggtaaagtgacaccaaaaggtgaaactcaactgactccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcctcagacgtgaaagatacgtctctgcgtgta
ccgaactcagtagcaggtacggttatcgacgtacaagtctttactcgcgatggcgtagaa
aaagacaagcgtgcgcttgaaatcgaacagatgcagctgaaagaagcgaagaaagacctg
actgaagagttccaaattctggaaggcggtcttctggcgcgtgttcgttctgtactgctg
gcgggtggttacactgaagcgaaactgggttcaatcgaacgtaagaaatggttagagcag
acgcttgaaaatgaagagctgcaaaaccagctagagcaactggcagaacagtacgacgaa
ctgaaagcagacttcgataagaagtttgaagcgaagcgtcgtaagatcacccaaggtgat
gatctggctcctggcgtactgaagattgttaaggtttacctagcagtgaaacgtcgcatc
cagccgggtgataagatggcgggtcgtcacggtaacaagggtgttatctctaagatcaac
cctgttgaagacatgccatacgatgaaaacggtcagccggttgacatcgtactgaaccca
ctgggcgtaccatcacgtatgaacatcggtcagatcctagaagttcacttgggtctggcg
gcgaaaggtatcggtgacaagatcaaccaaatgatcaaggaacaacaagagctggcgaag
ctgcgtgagttcctgcagaaggtttatgatctaggcgatactcgtcaacgcgttgatatc
tcagaactcagtgatgaagatgttcgtacactggcgcataacctgcgtgctggtctaccg
gtcgcaacgccagtcttcgatggtgctcctgaatcgtctatcaaagctatgttggaactg
gcggatctgccagcttcaggtcagttgactctgttcgatggccgcacgggtgacgcattt
gagcgccctgttaccgtgggttacatgtacatgctgaaactgaaccacttggttgacgac
aagatgcacgctcgttctacaggctcttacagtctggttactcagcaacctctgggtggt
aaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagcatac
ggtgctgcgtataccctgcaagagatgttgaccgttaaatcggacgacgtgaacggccgt
actaagatgtataagaacatcgtagatggcaatcacgcgatggaacctggtatgccagaa
tcgttcaacgtactgttgaaagagattcgctcgctgggtatcaacatcgagctagaagac
gaataa
DBGET
integrated database retrieval system
