Volvox carteri f. nagariensis: VOLCADRAFT_108387 Help Entry VOLCADRAFT_108387 CDS       T01330                                  Name (RefSeq) hypothetical protein   KO K12604   CCR4-NOT transcription complex subunit 1 Organism vcn  Volvox carteri f. nagariensis Pathway vcn03018   RNA degradation Brite KEGG Orthology (KO) [BR:vcn00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     VOLCADRAFT_108387  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vcn03019]     VOLCADRAFT_108387 Messenger RNA biogenesis [BR:vcn03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      VOLCADRAFT_108387   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      VOLCADRAFT_108387 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 Evr1_Alr CNOT1_HEAT ARM_Cnot1 NOT1_connector Motif Other DBs NCBI-GeneID:  9625615 NCBI-ProteinID:  XP_002958944 JGI:  108387 UniProt:  D8UJW1 LinkDB All DBs Position Unknown AA seq 2749 aa AA seqDB search MTVTITVKVKVSAQSQSLQLPTSRPKAHEDLLGEGGPRVNEPPRARALPGRCLHPFVVIA RLDPGDPGGQTPEPDVKKPGPRHQLGLLAAIKRGPITSSAHVVKRATPSSPDTLRALKRL AVLAYSHIADSQAFGTLLFQAFTVCVSADTNFFLDLAGVLGLSTPGELVKLGVTAYHLPG PAAKQQGLAVVRAALSNPEAALVRISPALLPKFTALLATERSQLGEFVALAQQIAEGSAA RGSPVHAALLNPHASLVDPLIEDSSVQASDSLLTMASEGTGSAAVQNVLEGYHGSLAALM QEFGYAVSADEACFKALLRQVPEPPSEEVVAEILLMMARTHTGLKESEPGLHFSLWVTLN LGNPPPRSVTVTTWNWPLVVDCLKSHPPGQPSRLNWAKVAECLDCERALLPDAAAFTLLA SAFRRGAGEQLPVAALTRMWKHPACQLSFLKAASVAPPDVFSFESSKRLVTLLEGMDVAA LSPNRAWASVDLLQALCMLMESAGLVGPARDVLQFPAATCPDLLLITIAETRTDWNLLQR DVFAALLPQHVALAAASTGAVNGKRSRELLTRVWSAAPPTVLLDLLIELYAQDPAHMTSR IAKVCADLGVLPQVLANTPIAFALELAAFAGGAGMINLEAWLSDYCNRDSMTAIPSMLRY VVDKTSDPPGGTTVGGAPGVPGASADVRRGVPLNADAARAFLKVLQASAQGLPVEMLREL QAVQSNLAKQFPSLTAHITTLSTSDTFASDVEEEANSYFQAIYNEARPIEEIIVRMQAYK SSLNPREQEVFACMIHNLFDEYRFFSRYPDRELFITATLFGSLIKHGLVSSITLGMALRY VLDALRKPAPSKMFTFGIEALRQFVHMIAPWPQFCAALLSNPQLREADAELYARVEQAQQ AGGVTGNGTLPGLPPVGAGGAPQGGSASAVDQPRQQQVPGQPQQHSHMGALEANTHGSSR FLNLQPADNTARAAAGQEDEASVAAAGPSITRNAKDAVASARATVGAATGGGEPSMSNAA PAGGKGGARELNAGGGGLASVPAASGGQAPQPSNTSLSGEGEGAGMYLAAQVAAASLSAP MGPSLAALVNTESLESAAEKYRDFKEPPEAVADKVHFVMNNITKDNMESRSVEIRDRVWP DYLAWFANYMVVKRAAQEANFHTLYVSLLDHLNDRELYRLMVKTTMYYVKVLLYSERILK ESNDRALLKNLGTWLGLLTFARNKPVLSRDLELKQVICEAYQRGRLIAVLPFVQKLLEGC RHSRVFKPTNPMVAAILSLLAELHAMKVIGLHGVPGSATGPCRCQPGFGCIARSLRNGAG GCWSCTYRRVGGGIQFSCAARFTCAICTPNNHDRICLRQGLKMNNAFSIELIFKAFGLSP HDVKPADTLKTLPRERITNPDWQLEQLPTEMPPQPVSDGPTSSAPATVSTSVGKPSVPSS PAPPSAPPSTAPPSSPGPMSGTGLRSSSGVQLPPGATSAGGPGSIDTVPKVMPAPPQVPA VPEQLQPQQPQQSMAYGMPGAAMPPGVTAPAAAVAAAAAAARAPGMAGAPGLPPDAGLFA NLHQHVIINPSLGDIGERLLLKRHVPAAVDRAIGEIITPVVERSVTIACYTTYELVLKDF AGDGDENKLRKAAHLMVSSLAGSLSLVTAKDPLRISLTNQLRQMLQPQVADAAMLDQIIS VLVTDNLDLGCNLIERAATDKAVRDIDKSLQAAYEERAKARAAGKQWVDAAAFHGAGSRF PGSLPESLRPRPGGINLQHIRVYEDFTRIPRTPPIPTSPALAVGSNQALVAPGPGAPPPP PGVSPRPPGAYAVAGAPPGSFQAVDAAVAGKDANPTADHSDLQALLAELSEALTSGAAPP EDAAVFFARRILKHLYDSVAAASGSKLSVSFHGACLELLNNMVPGGRVVNELTMAYLSAD DERKFNPALMEMLLRLRFLNMLELDAYLSKLLQTPVSRTQAVSDLVYFLLRAMTLRDGGV VVFTDLPLTMELLGRMAAANPPLASLVEAARKAAVAPVLSRSPAEIPGAVREKAADPPGL RDQSLKLFEDWVHLLNMHAEDKALHGFLNGQVRAAGVLKMDDTTDRFLRTLTELAVAHCL ASAEAAAAAAAAGAGARPEAVGSANSADGVNAATPPPAADQASQLRYLRACGVALHALQP LSVPGFAFGWLELISHRSFMPRVLTAPLASGWPLFASLLIALLRFLEPYLRAADLSESIK QLYKGCLRLLLVLLHDFPEFLCEHHFSLCEAIPPPAVQMRNLVLSAFPRNMRLPDPFTPN LKVDLLPEIQQLPRIVPDPEQLLPEALRQQELAKRCMMMPGSADKIGSPGGPGALLGGSS SGLTYNVPLINALVLYIGSQAKTVSSPLHPGAQEMYVRMAGELDAEGRYLLLNAMANQLR YPNAHTYYFSCTLLTLFLESKSEGLKEQITRTLLERLIVNRPHPWGLLITFIELIKNRRY NFWAHSFTKCAPEIENLFTSVSRSCLGTNRAEEEAAAAAHGKEAVAILGPEASTTASLPR AELPLPNHQSIGGPDVHMRTTNEPSGNSPASAPAAASDQPPARISLKDCRSRACAGVVDS FKRALRPRGEVALEGPARDPGSAGLAAFAAQTAAATDRQDEALAAAAAAAGGADAAGGCP PDTWQLGRATWTFLHSMAAAYPEQPSPRQQELMRYMMEGLAEFYPCEVCAEHLREQVRRR PPRVASAKDLNMWLCGIHNEVNEMLGKPLFDCNLLMERWRDGPPDGSCD NT seq 8250 nt NT seq  +upstreamnt  +downstreamnt atgacagttacaattacagttaaagttaaagtgtccgcgcagtcacaaagcctgcagctc ccaacatcccgacctaaagcgcatgaggacctgcttggggagggcggtccccgcgtgaat gagccacccagggcacgcgccctcccagggcggtgcctccatccatttgtggtaattgca cgccttgaccccggtgaccccggcgggcaaacccctgaaccggacgtcaagaagccgggg ccaagacaccaactgggtttgctggctgcaataaaaagaggacctataacgagcagcgcc catgtcgtgaagagggcgacccccagcagtcctgacacactcagagccctcaagcggctc gcagtcttagcttattctcacatagccgattcgcaagcatttggaactctcttatttcag gccttcacggtctgcgtttccgcggacaccaattttttccttgacttggccggggtcctg gggctgtcgactcctggggagctcgtcaaactaggtgtaacagcgtatcatctcccaggg ccggctgctaaacagcaaggccttgcagttgttcgggcggcacttagcaacccggaggca gcattggttcggatatcaccagcgttgcttccaaaatttactgcgttactggcgactgaa cggtcgcaactcggcgagtttgtagctcttgcccagcagattgctgaaggctccgcggct cgtggatcccccgtccacgcagctctgttaaatccacacgcgtcgcttgtggatcctctc attgaggatagctctgtccaggcttccgacagcttgctgacgatggcttccgaggggact ggttccgcagcagttcagaacgttttggagggttatcatggcagccttgccgcccttatg caagagttcggttacgctgtgtcggcagacgaggcctgttttaaggctcttctacgacag gtgcccgagccaccctcggaggaggtggtcgctgagatactgctgatgatggctcgaact cacaccggactaaaggagtcggagcccgggctgcatttttcactctgggtgacgctgaat ctgggaaaccctcccccaagatcggttacagtaaccacctggaactggccattagtggtg gattgcctcaagtctcacccgccagggcaaccaagcaggcttaactgggctaaagtggcc gagtgcttggattgcgaacgtgccctgctacccgacgctgcagcattcaccctattggca tcagcgtttcgccgtggtgccggggaacagttgcctgtagcagctttaacgcgcatgtgg aagcaccctgcctgtcagctgtctttcctgaaggcggcatcggtggcgccgcctgacgtg ttcagctttgagagctcaaagcgtctggtgactcttctcgagggcatggacgtggcagcg cttagtccgaaccgtgcttgggcgtcggtcgacctacttcaggcactgtgtatgctcatg gaaagtgcagggcttgtgggcccagctcgggatgtgcttcagtttcctgccgcaacctgc cctgacctcctgctgatcacaattgcggaaacacgtacggactggaacttgcttcagcga gatgtctttgcggcccttctgccgcagcatgtcgccttggcagcagcaagcacgggcgca gtgaatggcaagcgcagccgcgagctgctgacgcgtgtatggtccgcagcaccacccacg gtattgctggaccttcttattgaactttatgcacaggacccagcacacatgacgtcccga atcgcgaaagtctgcgcggacctcggtgttctcccccaggtcctggcgaatacgcctatt gctttcgcccttgagcttgccgccttcgctggcggtgccggcatgattaacttggaggcc tggctatcagattactgcaatcgggattccatgaccgccatacccagtatgctgcggtac gtcgtggacaaaacatctgatcctccaggtggcacgacggtaggcggtgcacctggagta ccgggtgccagtgcggatgtcaggcgtggcgtgccgttaaacgcagacgctgcacgtgcc ttcctaaaagtcctgcaggcctcagcgcaggggcttcccgtggaaatgctccgagaactt caggcggtccaatccaacctggcaaagcagtttccctctctaacggcgcacatcaccact ctgtccacctcggatactttcgctagtgacgttgaggaggaggcgaacagctacttccag gcgatctataacgaggcacgcccgatagaggagattattgttcgcatgcaagcatacaaa tcctcgctcaacccccgcgagcaggaagtgtttgcctgcatgatccacaacctcttcgat gagtatcggttcttttcgcgctatccggatcgagagctgtttattacagcaaccttgttt ggttcgcttataaagcacggtcttgtcagcagcatcaccctggggatggcgttgcgctat gtacttgacgctttgcgcaagccagcaccatctaagatgtttacttttggaattgaggcc ttgcggcagtttgtgcacatgatcgctccgtggccgcagttctgcgcagctctattatcc aatccccaattacgggaggcggacgcggagctgtacgcgcgcgtggagcaagcccagcaa gctggcggtgtcacaggcaatggtacactccctggcctgcccccggtcggagcaggtggt gcacctcagggcggatccgcttctgcggtggatcagccacggcagcagcaagtaccgggc cagccacagcagcatagccacatgggagcgctggaggcgaacactcatgggtcatcacgt ttccttaatcttcagccagccgataatactgcacgcgctgcggcgggccaggaagacgag gcatctgttgcagcggcaggtccttccatcacgcggaacgccaaggacgccgtcgcgtcg gcaagggcgactgtgggtgcagcgaccggaggcggcgagccctccatgtcaaacgcagct ccggctggtggcaagggcggagcgcgggagctgaatgcaggcggtggcggtctagcatca gtgccggccgcttctggtggacaggcgccacaaccaagcaacacaagcctttctggtgaa ggggagggcgcaggtatgtacctggctgcgcaagttgctgcggcatcactgtcagcaccc atgggaccgtctctggcggctcttgtgaacaccgagagtctggagagcgcagcggaaaag tatcgcgattttaaagagcctccagaagctgtggctgacaaggttcacttcgtcatgaac aacataactaaggacaacatggagtcgcggagcgtagaaattcgcgatcgtgtctggcct gattaccttgcctggtttgccaactacatggtagtgaagcgagcggctcaggaggctaac ttccatacgttatacgtgtctctcctggatcacctgaacgaccgcgagctatatcgcttg atggtcaagaccaccatgtactacgttaaggtgctgctgtactcggagcgcattttgaag gagtccaacgatcgtgcactgctgaagaacctgggcacctggctggggctcctgacgttt gcacgcaacaagccggtgttaagccgcgatttggagcttaagcaggttatctgcgaggcg taccagcggggccgcctcattgctgttttgccgttcgtgcagaagttgctggagggctgc aggcatagccgcgtcttcaagcccacgaatcctatggtagcagcgattttgtctctgctg gcggagttgcacgcaatgaaggtgattggtttgcatggggttccgggctctgccactggc ccctgccggtgtcagcccggattcgggtgtattgcaaggtcactgaggaacggtgctggc ggatgttggtcttgcacttataggagggtcggcggtggcatccagtttagttgcgctgca cgatttacatgcgcgatttgcacacctaacaatcatgatcgaatttgtttgcgccagggt ctcaaaatgaacaacgccttctcgattgagctaattttcaaggcatttggcctgagccca catgatgtaaagccagcggatacccttaagacgctgccacgagagcggataacgaaccct gactggcagctcgagcaactgccaacggagatgccgccgcaacctgtttctgacggacct accagctccgctcctgcgaccgtttcaacttctgtgggcaagccgagtgtgccgtcgtca ccggcgccgccttccgcgccgccatcaacggcgcctccgtcgtcaccgggtcccatgtcc ggtacggggctgcgctcgtcatccggtgtgcagctgccgccaggggccacgtcggccggt ggtcctggttcgatcgacacagtgccaaaggtaatgccggcgcccccacaagtcccagct gtcccagagcagctacagccgcagcaaccacagcagtcgatggcttacggtatgccaggt gcggccatgccgccgggggtcaccgcgcccgctgcagcagtggcagccgcggctgcagct gcacgcgcgcctggcatggcaggtgcgcccggtctgccacctgacgcgggactgtttgcg aaccttcaccagcacgtcattattaacccatccctgggcgacatcggcgagcgtctgctg ttgaagcggcatgtaccggctgcagtggaccgcgctatcggcgagatcatcactccggtg gttgagcgcagcgtcacgattgcctgctacaccacgtacgagctggtgcttaaggacttc gcgggtgacggcgacgagaacaagttgcgcaaggcggcacacttaatggtctcgtccctg gcaggctcactgagtctggtgacagcgaaagatccgctacgaatttcccttaccaaccag ctgcgacagatgcttcagccgcaagtggctgacgcagccatgctcgaccaaatcatcagc gttctggttacggacaacctggacctgggttgtaacctcattgagcgggctgccactgat aaggccgtccgagacattgacaagagcctgcaggctgcttatgaggagcgcgcgaaagct cgtgcggccggcaagcagtgggtagatgcggctgcgttccacggcgcggggtccaggttc cctggtagcttgccggaaagtctccggccccgccccggtggcattaatctccagcacatc cgtgtatatgaggatttcacccgaatcccacgtactccgccaatccctacatcgcctgcg ctggcggtcggttcgaatcaagccctcgtggctccgggcccgggagctccgccgccacct ccaggggtctccccccgcccaccgggtgcatatgcagtagccggggctcctcctggttcg ttccaggcggtggacgccgctgtcgctgggaaggacgctaaccccacagcagaccactcg gacttgcaggccctcttggcggagctgagcgaggcgctgacgtcaggtgccgcgccgccc gaggatgcggcggtcttcttcgctcgccgcatcctcaagcacctgtatgactcggtcgct gccgcgtcaggttccaagctgtcggtgtccttccacggcgcctgcctggagctgctcaac aatatggtgcctggtgggcgcgtcgttaacgagttgacaatggcgtacctgagcgctgat gacgagcgcaagttcaacccggctctaatggagatgctcttgcgtcttcgtttcctgaac atgctggagctcgatgcctatctatcgaagctgttgcagacgccggtgtctcgtacacag gcggtgtcggacctcgtatattttctgctgcgcgctatgacgctgcgcgatggtggtgtg gtggtattcacggatttgccgctcaccatggagctgctgggcaggatggcagccgccaac cctccattggctagcttggtggaggcagcgcggaaggccgctgttgccccggtcctcagc cgttcaccagccgaaatccccggtgcggttcgtgagaaggctgccgatccgcctggcctt cgcgaccagtcgctgaagctgttcgaggactgggtccacctcctgaacatgcatgccgag gataaggcattgcatggcttcctgaacggccaagtccgggccgctggagtgctcaagatg gatgacacgactgatcgcttcttgcggacgcttactgagctggcggttgcacactgcttg gcgtcggcagaggccgcagcagcggcagcggctgctggtgccggtgctcgtccagaggcc gtgggctcggcgaacagcgcagatggggtgaatgccgccacaccaccacccgctgctgac caggccagtcagctccgttacctgcgggcctgtggtgtggctctacacgcactgcagccg ctatcggtacccggctttgcatttggctggcttgaacttatctcgcaccgctccttcatg ccacgtgtgttaactgcgccgctggcaagcgggtggccactgtttgcgtccctgctgatt gcgctcttgcgcttcttggagccctacctacgtgcggcggacctttcggagtcgatcaag cagctttacaagggctgcctgcgattgctgctggttctcctgcacgatttcccggagttc ctctgcgagcatcatttcagcctgtgcgaggcgattccaccgccagccgttcagatgcgc aacctggtcctgtcagccttcccccgtaacatgcggctgccagaccctttcacaccgaac ttgaaggtggatctactgcctgaaattcagcagcttccgcgcattgtgccagatccggag cagctgcttccagaggcgcttcgccagcaggagctggccaagcgctgtatgatgatgccg gggtctgcggacaagattggcagtccgggtggtccgggtgcactgctgggtggttcaagc agcggactgacgtacaacgtgccactgatcaacgcccttgtgctgtacattggctcgcag gccaagacggtgtccagcccattgcatccaggagcacaggagatgtacgtgcgcatggcg ggtgaactggacgcggagggccgctacctgctgctcaatgccatggccaatcagttgcgc taccccaatgcgcacacatattacttctcctgtacgctgctaactcttttcctagaatcc aagagtgagggattgaaggagcagattacgcgcacgcttctggagaggctcattgtgaat cggccgcatccgtggggcctgttgattaccttcatcgagctgatcaagaacaggcgatac aacttctgggcacacagcttcaccaagtgcgcgccggaaattgagaatctgttcacctcg gtctcgcggagctgcttgggcaccaaccgggctgaggaggaggcggcagcggcggcgcat gggaaggaggctgtagcaatacttggcccggaggcctcaaccaccgcctccttaccaagg gctgaactccccctgcccaatcaccaaagcatagggggcccagatgtacatatgcgtacc accaacgagccctcaggtaattcgccagcgtcagccccagctgccgcatcggatcagccg cccgcgcgcatcagcctgaaggactgccgctcccgagcttgcgctggagtggtggactcc ttcaagcgagccctacggccccggggtgaagtggcgttggaggggccagccagggacccc ggctccgccgggctggctgcgttcgccgcgcagaccgctgccgctacagaccggcaggat gaggcgctggcagcagcagcagcagcagcaggtggcgctgacgcggccggtggctgtcct ccagacacgtggcagttgggtcgcgccacgtggaccttccttcacagcatggctgcagcc taccctgagcagccctccccgcggcagcaggagctgatgcgctacatgatggaggggctg gcggagttctacccctgcgaggtctgcgcggagcacctcagggagcaggttcgccgcagg cccccccgggtggcctccgcgaaggacctcaacatgtggctgtgcggcattcacaacgag gttaacgagatgcttgggaagccgctgttcgactgcaatcttctaatggagcgctggcgg gacgggcccccggacgggtcgtgcgactga

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