Vibrio cholerae O1 O395: VC395_0371
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Entry
VC395_0371 CDS
T02099
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcr
Vibrio cholerae O1 O395
Pathway
vcr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VC395_0371 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcr03021
]
VC395_0371 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcr03400
]
VC395_0371 (rpoB)
Enzymes [BR:
vcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VC395_0371 (rpoB)
Transcription machinery [BR:
vcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VC395_0371 (rpoB)
DNA repair and recombination proteins [BR:
vcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VC395_0371 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF6155
Motif
Other DBs
NCBI-ProteinID:
ACP08394
UniProt:
A5F3P5
LinkDB
All DBs
Position
I:389705..393832
Genome browser
AA seq
1375 aa
AA seq
DB search
MNSHYSKQRLVTVLTLFNLKGGQFGSLISELRNPMVYSYTEKKRIRKDFGTRPQVLDIPY
LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQ
IRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIV
SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPA
SIILRVLGKTSAEILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDIEADGKVYVEKG
RRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLS
QAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFE
SLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDID
HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFF
GSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG
PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEE
GGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQ
RQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEA
GIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMP
WNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLD
ESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAG
TVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLAGGYTE
AKLSSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGV
LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR
MNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDE
DVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTV
GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgaattcacactacagtaaacagcgattagtcactgtcctcaccctttttaacctgaaa
ggtggacagtttgggtcacttatcagcgagctgaggaaccccatggtttactcttatacc
gagaaaaagcgcatccgtaaggactttggtactcgtccacaagtgttggacattccatac
ctgctatcgatccagctcgattcgttcgaaaagttcatcgaacaggatcctgaaggacaa
tacggtcttgaagccgcttttcgttctgtatttccaattcagagctataacggcaattca
gagctgcaatacgttagctaccgtcttggtgagccagtttttgacgttaaagaatgtcaa
atccgtggtgtaacttattcaaaaccgctacgcgtgaaattacgcttagtgatctttgat
aaagacgcgccagcaggtactgtcaaagatattaaagaacaagaagtctacatgggcgaa
attccgctcatgacagaaaatggtaccttcgtaatcaatggtactgagagggttatcgta
tcccagctgcaccgaagcccaggcgtgttcttcgacagcgataagggtaagacccactct
tcaggtaaagttctgtataacgcacgtatcattccgtaccgtggttcatggctcgatttt
gagttcgatccaaaagacaacctgtacgtacgtattgaccgtcgtcgtaagctgcctgca
tcgatcatcctgcgtgtactaggtaaaactagcgccgagatcctggacatcttcttcgaa
aaagtgaatttcgaagtgaaagatcaaactctaatgatggagttggttccagagcgtctg
cgtggtgaaactgcgaccttcgatatcgaagcggatggcaaggtttacgtagagaaaggc
cgtcgtgtgactgcacgtcacatccgtcaacttgaaaaagatggcgtgaactttattgaa
gttccggttgagtacatcgtaggtaaagtatctgcgaaagattacgtgaatgaagcgact
ggcgaactgatcattaccgcgaaccaggaaatcagcctggaagcgctagcgaacctgtct
caagccggttacaaaaagctagaagttctatttaccaatgatctggaccacggtccgttc
atgtcagaaaccctgcgtgttgatagcacgacagatcgcatctctgcactggtagaaatc
taccgcatgatgcgccctggcgagccaccaacgaaagaagccgcggaatcgctgtttgaa
agtctattcttctctgcagagcgttacgatctgtcgactgttggccgtatgaagttcaac
agctcaatcggtcgtgaagatgcggaagagcaaggcacgctggacgaagttgacatcatc
gaagtgatgaaaaagctgatctcgattcgtaacggtaaaggcgaagtggacgatatcgac
caccttggcaaccgtcgtatccgtagtgtcggcgaaatggcagagaaccaattccgtgtt
ggtctggtacgtgttgaacgcgcagtgaaagaacgcctaagcttgggcgatctggacaac
gtgatgccacaagacctgatcaacgcgaaaccaatttctgctgctgtaaaagaattcttt
ggttcttctcagctgtctcagtttatggatcagaacaacccgttgtcagaagtgacgcat
aagcgtcgtatttctgcattgggccctggcggtctgactcgtgagcgtgctggcttcgaa
gtacgtgacgtacacgtaacgcactacggtcgtctatgtcctatcgaaacacctgaaggt
ccaaacatcggtttgatcaactcgctgtctgcgtttgcacgctgcaacgagtacggtttc
ctagaaaccccttaccgtcgcgtagtcaacggtgttgtgactgacgaagtggattacctc
tctgcgattgaagaaggtcaattcgttatcgctcaggcgaacgctaagctgacagaagaa
ggcggttttgctgatgaactggttaccgcacgtcaaaaaggcgagtcaggtcttcaccca
cgtgaacacgttgactacatggacgttgcgacaaaccaagttgtatcgatcgcggcatcc
ttgatcccgttcctagaacacgacgatgcgaaccgtgctttgatgggtgcgaacatgcaa
cgtcaggcggttccaactctgcgttcagagaaaccactggttggtacgggtatcgagcgt
aacgtcgcggttgactctggtgtaacagcggtggcgaaacgtggcggtgttatccagtca
gttgacgcttctcgtatcgtagtcaaagtgaacgaagaagagttgatccctggcgaagcg
ggtatcgacatctacaacctgactaagtacacccgttcgaaccagaatacttgtatcaac
cagcgtccatgtgtgatgccgggtgaacctgtagctcgtggcgatgtactggcagacggt
ccttccactgaccttggcgaactggctcttggccaaaacatgcgtatcgcattcatgcct
tggaacggttacaacttcgaagactcgatcttagtgtctgagcgcgtagttcaagatgac
cgctttaccactatccacatccaagagctttcttgtgtggcgcgtgatactaagctgggc
gcagaagagatcacggctgacatccctaacgtgggtgaagcggctctgtctaagcttgac
gaatctggcatcgtgtacatcggtgcagaagtgaaaggcggcgacattctggttggtaaa
gtgacaccaaaaggtgaaactcaactgactccagaagagaaactgctgcgtgcgatcttc
ggtgagaaagcctcagacgtgaaagatacgtctctgcgtgtaccgaactcagtagcaggt
acggttatcgacgtacaagtctttactcgcgatggcgtagagaaagacaagcgtgcgctt
gaaatcgaacagatgcagctgaaagaagcgaagaaagacctgactgaagagttccaaatt
ctggaaggcggtcttctggcgcgtgttcgttctgtactgctggcgggtggttacactgaa
gcgaaactgagttcaatcgaacgtaagaaatggttagagcagacgcttgaaaatgaagag
ctgcaaaaccagctagagcaactggcagaacagtacgatgaactgaaagcagacttcgat
aagaagtttgaagcgaagcgtcgtaagatcacccaaggtgatgatctggctcctggcgta
ctgaagattgttaaggtttacctagcagtgaaacgtcgcatccagccgggtgataagatg
gcgggtcgtcacggtaacaagggtgttatttctaagatcaaccctgttgaagacatgcca
tacgatgaaaacggtcagccggttgacatcgtactgaacccactgggcgtaccatcacgt
atgaacatcggtcagatcctagaagttcacttgggtctggcggcgaaaggtatcggtgac
aagatcaaccaaatgatcaaggaacaacaagagctggcgaagctgcgtgagttcctgcag
aaggtttatgatctaggcgatactcgccaacgtgttgatatctcagaactcagtgatgaa
gatgttcgtacactggcgcataacctgcgtgctggtctaccggtcgcaacgccagtcttc
gatggtgctcctgaatcgtctatcaaagctatgttggaactggcggatctgccagcttca
ggtcagttgactctgttcgatggccgcacgggtgacgcatttgagcgtcctgttaccgtg
ggttacatgtacatgctgaaactgaaccacttggttgacgacaagatgcacgctcgttct
acaggctcttacagtctggttactcagcaacctctgggtggtaaagctcagttcggtggt
cagcgcttcggtgagatggaagtgtgggcactggaagcatacggtgctgcgtataccctg
caagagatgttgaccgttaaatcggacgacgtgaacggccgtactaagatgtataagaac
atcgtagatggcaatcacgcgatggaacctggtatgccagaatcgttcaacgtactgttg
aaagagattcgctcgctgggtatcaacatcgagctagaagacgaataa
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