Vibrio coralliilyticus RE98: IX92_13965
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Entry
IX92_13965 CDS
T03444
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX92_13965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcy03021
]
IX92_13965 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_13965 (rpoB)
Enzymes [BR:
vcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX92_13965 (rpoB)
Transcription machinery [BR:
vcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX92_13965 (rpoB)
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX92_13965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AIW20079
UniProt:
A0AAN0SCV1
LinkDB
All DBs
Position
1:complement(3014357..3018385)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVGKVSSKD
YINEATGEIIVAANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSDTLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIEREDAQEQGTL
DETDIVEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIQEGQYVIAQANTVLTEQGTFSEELITARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLDGGYTEAKLDAIDRKKWLELTLEDDAQQTQLEQLAEQYDE
LRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FRDFLQKVYDLGDTRQKVDVASLSDDEVRTLIKNLRGGLPIATPVFDGASEQSIKELLKL
GDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgaaaaattcatcgaa
caggatcctgaaggtcaatacggtcttgaagctgctttccgttctgtatttccaattcag
agctacaacggcaattccgagctgcaatacgttagctaccgtcttggtgagccagttttt
gatgttaaagaatgtcaaattcgcggcgtaacttactcaaaaccacttcgcgtaaaacta
cgcctagtaatctttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtaccttcgttatcaatggt
accgagagggttatcgtatcccagctgcacagaagcccaggtgtattcttcgacagcgat
aaaggtaagacccactcttcaggtaaagttctatataacgcacgtatcattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggacaacctatacgtacgtatcgaccgc
cgtcgtaagctaccagcatctatcattcttcgcgcactaggtaagacgacagaagagatc
ctggacatcttctttgagaaggtgaacttcgaggttaaagatcaaactctacttatggag
ttggtacctgatcgtctacgtggtgaaactgcgtcattcgatatcgaagcaaacggcaag
acttacgttgaaactggtcgtcgtgtaacggcacgccacatccgtcagcttgaaaaagat
ggcgttgagcacatcgaagtaccagtagagtacatcgtaggcaaagtgtcttcgaaagac
tacatcaacgaagcgactggcgagatcatcgttgcggctaaccaagaaatcagtcttgaa
gcactagcgaacctatctcaggcaggccataaagctctagaagttctatttacgaacgac
ctagatcacggtccattcatgtcagacacactacgtatcgacagcactgttgatcgtatt
tctgcattggtagaaatctaccgcatgatgcgccctggtgagccaccaacgaaagaagct
gctgaagcactattcgaaagcctattcttctcagaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcgaacgtgaagatgctcaagagcaaggcacactt
gacgaaactgatatcgttgaagtgatgaagaagcttatcgctatccgtaacggcatcggt
gaagtggacgatatcgaccacctaggtaaccgtcgtatccgttcagttggtgaaatggct
gaaaaccaattccgcgttggtctagtacgtgttgaacgtgctgttaaagagcgtctaagc
cttggtgaccttgatgcaatcatgcctcaagatctaatcaacgctaagcctatctctgct
gcggttaaagaattctttggctcttcacagctttcacagtttatggaccaaaacaacccg
ctatcagaagtgacgcacaagcgtcgtatctctgcattgggtcctggcggtctaactcgt
gaacgtgctggcttcgaagtacgtgacgtacacgtaactcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagactccataccgtcgcgtagtagatggcgtagtaaca
gacgaagtagattacctatctgctattcaggaaggtcagtacgttatcgctcaggcgaac
actgttcttactgaacaaggcacattctctgaagagctaatcactgctcgtcagaaaggt
gaatctggcctacacccacgcgaacatgttgactacatggacgttgcaactaaccaggtt
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacacttaaggctgataagcctctagtt
ggtactggtatcgagcgtaacatcgcagttgactctggtgttacagcggtagcgaaacgt
ggtggtgtaatccagtctgtagatgcttctcgtatcgttgttaaagtaaacgaagacgag
ctgatccctggcgaagcaggtatcgatatctacaacctaactaaatacactcgttctaac
caaaacacgtgtatcaaccagcgtccatgtgtgatgccgggtgaacctgttgcacgtggt
gacgttcttgctgatggtccttcaacagaccttggtgagctagcacttggtcagaacatg
cgtatcgcattcatgccttggaacggctacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcactacgatccacatccaagagctatcttgtgtggcg
cgtgatactaagcttggtgctgaagaaatcacagctgacattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgcggaagtgaaaggcggt
gacatccttgtaggtaaagtaacgcctaaaggtgaaactcagctaactcctgaagagaag
ctactacgtgctatcttcggtgagaaagcgtcagacgttaaagacacgtctctacgtgta
ccaaactctgtttcaggtacaatcatcgacgttcaagtatttactcgtgacggtgttgaa
aaagacaaacgtgcacttgagattgaacagatgcagcttaaagaagcgaagaaagacctt
actgaagaattccagattcttgagggtggccttctaaaccgtgttaaagctgtacttcta
gacggtggttacactgaagcgaaactagacgctatcgatcgtaagaagtggctagagcta
acgcttgaagatgatgctcaacagactcagcttgaacagctagcagagcagtacgacgag
ctacgtgctgacttcgataagaagtttgaaactaagcgtcgtaagatcacacaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccttacgatgagaaaggtcagccggttgatatcgtactgaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggcatcggtgacaagatcaaccagatggtgaaagagcagcaagagctggctaag
ttccgtgacttcctacagaaagtttacgaccttggcgatactcgtcagaaagtagacgtt
gcgtctctatctgatgacgaagttcgtacgctgatcaagaacctacgtggtggtctaccg
atcgcgactccagtatttgacggtgcttctgagcaatcaatcaaagagctattgaaacta
ggtgacctaccagaatctggtcagctaacgctatttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttctactggctcgtacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactggaagcatac
ggtgcagcttacaccctacaagaaatgctaaccgttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgtagacggtaaccacagcatggaacctggcatgccagaa
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
