KEGG   Verticillium dahliae: VDAG_00412
Entry
VDAG_00412        CDS       T03450                                 
Name
(RefSeq) nuclear pore complex subunit
  KO
K14299  nucleoporin SEH1
Organism
vda  Verticillium dahliae
Pathway
vda03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    VDAG_00412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_00412
   04131 Membrane trafficking [BR:vda04131]
    VDAG_00412
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     VDAG_00412
Membrane trafficking [BR:vda04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    VDAG_00412
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Prp19 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_EML
Other DBs
NCBI-GeneID: 20701875
NCBI-ProteinID: XP_009650084
UniProt: G2WS79
LinkDB
Position
2
AA seq 544 aa
MAHPPEPPFVAEERAGFDLNLSHGHRDLVQSVAFNAYGDRCATGAVDGKIRVFNRHKDGV
WRLCDTWGAHGGETLELQWLPPTVYPNLLASLGGYGRFKLWAEDPSAAPGRRFSAGSSRT
LSGKPAFETRSNKAPYRSFSIKHNEETRHTYLALLAADGSLSVYENDQPENLSEYTLIDD
FAVAPKPARGEEVSFKVEFDPNPDPCYTALRAGVPTDSLAIVVAAMGTVKLYRSRDIITA
SYGVPQAQKEFYLAAEIGPGAHRGLVRDIAWAPGNVRGYDTIASACQDGYVRVFRVETPY
DENDGKTWAAADLVRRETQNGGGAGAGAGGEALAAAIGPSHEKHQHQSGLSASLAKSGAT
AERQSSGQPGQVAHVVREVAKLDSHRTPVWRVDFDDDGQILGSTGDDGKLVFYRQTPQGA
WAKSSELGMLKTRMATPSTARMPIAAPSLEADGLESATEAELAAAWTCARNQKNPHEVFG
TTNSHVLPCPPSTEPSIDGWSCRRVSGCSCSRRQVEQWMSRLWAEKSEESSLTCGLAENR
SWVS
NT seq 1635 nt   +upstreamnt  +downstreamnt
atggctcatcccccagaaccgccgtttgtcgccgaagagcgcgccggcttcgacctcaac
ctctcccacggccaccgagacctagtccaatccgtcgccttcaatgcctatggcgatcgc
tgcgcgaccggcgccgtcgacggcaagattcgagtcttcaatcgccacaaggacggcgtc
tggcgcctctgcgacacctggggcgcacatggcggcgagactctagagcttcagtggctt
cctccgaccgtctacccgaatctgctggcctccctcggtggctacggccgcttcaagctc
tgggccgaagacccgtccgctgccccgggccgccgcttcagcgctggctcctctcgtacc
ctctccggcaagcccgcgttcgagacgcgttccaacaaggctccctaccgctccttctcc
atcaagcacaacgaggagacgcgccacacctacctggccctcctcgccgccgacggcagc
ctctccgtctacgagaacgatcagcccgagaatctgtccgagtacaccctcatcgacgat
tttgccgtcgcccccaagcccgcgcgcggcgaagaggtcagcttcaaggtcgagttcgac
cccaaccctgacccctgctacaccgctctgcgcgccggcgtccccaccgactctctcgcc
attgtcgtcgccgccatgggcaccgtcaagctctaccgctcccgcgacatcatcacagcc
tcctatggcgtgccgcaggctcagaaggagttctacctcgccgccgagatcggccccggc
gcccatcgtggcctcgtccgcgacattgcctgggcccccggcaacgtccgcggctacgac
accatcgcctcagcctgccaggacggctacgtccgcgtcttccgcgtcgagacgccctac
gacgagaacgacggcaagacatgggccgccgccgatctcgtccgccgcgagacccagaac
ggcggcggtgctggcgccggcgccggcggcgaggccctcgccgccgccatcggcccctcg
cacgagaagcaccagcaccagtccggcctcagcgcgagcctcgccaagtcgggcgccacc
gccgagcggcagtcgtcgggccagccgggccaggtggcgcacgtcgtgcgcgaggtcgcc
aagctcgacagtcaccggacccccgtgtggcgcgtcgactttgacgacgacggccagatc
ctcggcagcacgggcgacgacggcaagttggtcttttaccggcagacgccgcagggggcg
tgggccaagagctccgagctgggcatgctcaagacgcgcatggcgacgccgtccacggca
cggatgccgatcgccgcgccaagcctcgaggccgatggccttgagtcggctacggaagcc
gagctggcagcggcatggacttgtgcacggaaccagaaaaacccacatgaggtcttcgga
acgacgaattcacacgtgctgccttgcccaccttcaacagagccgtctatagatgggtgg
tcttgcaggagagtctcgggctgctcctgttcgcggcgccaagttgagcaatggatgtct
cggctgtgggcggagaagtctgaggagagcagccttacctgtggcttggctgaaaatagg
agctgggttagttag

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