Verticillium dahliae: VDAG_00412
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Entry
VDAG_00412 CDS
T03450
Name
(RefSeq) nuclear pore complex subunit
KO
K14299
nucleoporin SEH1
Organism
vda
Verticillium dahliae
Pathway
vda03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VDAG_00412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_00412
04131 Membrane trafficking [BR:
vda04131
]
VDAG_00412
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
VDAG_00412
Membrane trafficking [BR:
vda04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
VDAG_00412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
20701875
NCBI-ProteinID:
XP_009650084
UniProt:
G2WS79
LinkDB
All DBs
Position
2
AA seq
544 aa
AA seq
DB search
MAHPPEPPFVAEERAGFDLNLSHGHRDLVQSVAFNAYGDRCATGAVDGKIRVFNRHKDGV
WRLCDTWGAHGGETLELQWLPPTVYPNLLASLGGYGRFKLWAEDPSAAPGRRFSAGSSRT
LSGKPAFETRSNKAPYRSFSIKHNEETRHTYLALLAADGSLSVYENDQPENLSEYTLIDD
FAVAPKPARGEEVSFKVEFDPNPDPCYTALRAGVPTDSLAIVVAAMGTVKLYRSRDIITA
SYGVPQAQKEFYLAAEIGPGAHRGLVRDIAWAPGNVRGYDTIASACQDGYVRVFRVETPY
DENDGKTWAAADLVRRETQNGGGAGAGAGGEALAAAIGPSHEKHQHQSGLSASLAKSGAT
AERQSSGQPGQVAHVVREVAKLDSHRTPVWRVDFDDDGQILGSTGDDGKLVFYRQTPQGA
WAKSSELGMLKTRMATPSTARMPIAAPSLEADGLESATEAELAAAWTCARNQKNPHEVFG
TTNSHVLPCPPSTEPSIDGWSCRRVSGCSCSRRQVEQWMSRLWAEKSEESSLTCGLAENR
SWVS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggctcatcccccagaaccgccgtttgtcgccgaagagcgcgccggcttcgacctcaac
ctctcccacggccaccgagacctagtccaatccgtcgccttcaatgcctatggcgatcgc
tgcgcgaccggcgccgtcgacggcaagattcgagtcttcaatcgccacaaggacggcgtc
tggcgcctctgcgacacctggggcgcacatggcggcgagactctagagcttcagtggctt
cctccgaccgtctacccgaatctgctggcctccctcggtggctacggccgcttcaagctc
tgggccgaagacccgtccgctgccccgggccgccgcttcagcgctggctcctctcgtacc
ctctccggcaagcccgcgttcgagacgcgttccaacaaggctccctaccgctccttctcc
atcaagcacaacgaggagacgcgccacacctacctggccctcctcgccgccgacggcagc
ctctccgtctacgagaacgatcagcccgagaatctgtccgagtacaccctcatcgacgat
tttgccgtcgcccccaagcccgcgcgcggcgaagaggtcagcttcaaggtcgagttcgac
cccaaccctgacccctgctacaccgctctgcgcgccggcgtccccaccgactctctcgcc
attgtcgtcgccgccatgggcaccgtcaagctctaccgctcccgcgacatcatcacagcc
tcctatggcgtgccgcaggctcagaaggagttctacctcgccgccgagatcggccccggc
gcccatcgtggcctcgtccgcgacattgcctgggcccccggcaacgtccgcggctacgac
accatcgcctcagcctgccaggacggctacgtccgcgtcttccgcgtcgagacgccctac
gacgagaacgacggcaagacatgggccgccgccgatctcgtccgccgcgagacccagaac
ggcggcggtgctggcgccggcgccggcggcgaggccctcgccgccgccatcggcccctcg
cacgagaagcaccagcaccagtccggcctcagcgcgagcctcgccaagtcgggcgccacc
gccgagcggcagtcgtcgggccagccgggccaggtggcgcacgtcgtgcgcgaggtcgcc
aagctcgacagtcaccggacccccgtgtggcgcgtcgactttgacgacgacggccagatc
ctcggcagcacgggcgacgacggcaagttggtcttttaccggcagacgccgcagggggcg
tgggccaagagctccgagctgggcatgctcaagacgcgcatggcgacgccgtccacggca
cggatgccgatcgccgcgccaagcctcgaggccgatggccttgagtcggctacggaagcc
gagctggcagcggcatggacttgtgcacggaaccagaaaaacccacatgaggtcttcgga
acgacgaattcacacgtgctgccttgcccaccttcaacagagccgtctatagatgggtgg
tcttgcaggagagtctcgggctgctcctgttcgcggcgccaagttgagcaatggatgtct
cggctgtgggcggagaagtctgaggagagcagccttacctgtggcttggctgaaaatagg
agctgggttagttag
DBGET
integrated database retrieval system