Verticillium dahliae: VDAG_07472
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Entry
VDAG_07472 CDS
T03450
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vda
Verticillium dahliae
Pathway
vda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDAG_07472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_07472
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VDAG_07472
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
VDAG_07472
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
Motif
Other DBs
NCBI-GeneID:
20708935
NCBI-ProteinID:
XP_009654672
UniProt:
G2XB42
LinkDB
All DBs
Position
5
AA seq
2176 aa
AA seq
DB search
MVPPSRAGSFSPNPAQTLQTGNSHSPNPSQGGQFSSGASPSTHSPTGTNPLAKIVVAQIY
LLLSTIKEDKGRVKRETQADQLKKLLDDHGMEVFSKYFTRLVAGNAGQIFPGLTRPVSNP
GNYHLLVNEMRNIAHDANQAIKIAESIDSGTEDIFRDFDLSTFMEHFKLDALEKTILALA
FKLGSRSDLKTKADAILSTNFPTFVNIIARPDLEEHADLTDSFIATIVDRFIQYQPPNFN
AASKSELAFKVKSRWDGDQAPPPSEVLAALDLVRVLADKPPNALATYIQRTGAGFTKDHD
ACVSYLQNRPTHVQLSEEQVSIALTYTTISQTPHHDPSILAAALRRVLPSTFRWQDVVTY
FDQRSARISSQQFLRLYNALVPIAQDSSSSLNIEQLWGGNWENPETQLSFICAFASLMPD
QLDASTIPGLSPTLTLDSFAQSPSEVRQRAAFAVKHPLVSVAALAAVFHVALHSVHASQT
VEAKRLFQEVVVPNLDIFVVSAFGVPKPWPSMATETLISLFDNFLYKRSAEYDFVLDSLW
QRDRHWVTQRLIDAHAVKPTDLPLIFEHAVKHKWLEDLVSLTSGFGLDLAAFAHAEGYLD
LGHWARQNSERSAEVARSLQQFLLIKANLELQYQRPPDGQSIVKSTTLQVKTVSALLQIL
EDFMPKAPVHDLILVQRSCITVYPRLINYGEGYDDVIDANGADGNALPLAANAKMEEHYK
KMYGDEIQVRNIVDVLRRYKHSRDPLDQDVFACMIHGLFDEYAHYVDYPLEALATTAVLF
GGIISHKLIADLPLKIGLGMILEAVRDYPPDVSMYKFGLQALMQLFSRFREWPGFCKQLL
QIPGLQGTEAWKKAEDVVREHEEEGSRSRTGPNPPTHATAFSAEPVPNGGADEPRDADRQ
APPFASINAESSFPALAFESPSDDTQGKIQFVLNNLTETTLQSMCKELRDMVEQRHQQWF
ASHLVEERAKMQPNYHQVYLDLVKLFEDKVLWAEVLRETYLSVARMLNSEATITNPTERS
HLKNLGGWLGLLTLARDRPIKHKNIAFKQLLLEAHDTKRLVVVLPFVCKVLIQGIHSTVF
RPPNPWLMDIIHLLIDLYHHAELKLNLKFEIEVLCKGLSLDHKTIEPSGEILNRTAADEP
LELLGHDSLESFDNLSLNGLATGVSAGLSPQILPASIPDLAPMIQIPPTNEMVVATSRLH
DIVRTALTRALQDIIQPVVDRSVTIAAISTREMIRKDFATEPDETRIRTSAINMVKATAG
SLALVTSKEPLRGNFTNYLRNLSNDLPQGLPEGTIIMCVNSNLDLACNIIEKQAEERAVP
EIEEMIETELDARRRHRSQRPNEPYVDPSLSRWAWTIPNPFKLSPSLSGLNPEQMAIYED
FARQPRASNTTTVSHAPSVSETTRSMANDVLADQFNSLPISTPAETPAAQHLTSHMPSYG
PPHLGGVASGRPFQLDGRALFERVQKLLVELQRVATEAREDHFVDLPRPHPVLDVVDALV
QHMIKTSQNSEEFALFAAEQIIQLVFSQVEDNLALESLVHVLETLRKISGPGLNNRVTTL
FRQQPGSSFLRLPLLAALLRTDLIDWRNVDVALAKTVQQRKEGSLEFLEQMIDLTLLGPR
PLALYGDFVRTLDVAWTLVHDDPESPISQRLLAKLSSQGISLSVSADSDILHQRDQLEYV
FDEWVHLYGNPNAPDDSAVLFARQMQARGLLRNKDDLFLLIRVAVDVSVDRYEHFAHTTG
TVADAFIATDALAKMIGVLIKDHGAEDVGTTTSRPVYLDSVLALLTLVLSHHHLKRVEHF
NQRVFHRLLSVLLHEVGAIESQVDELEQLDMLLRIASRLADLSPRYLPGFAYGWLSLIQH
RAFLPAILKERAGWSAYTTLLRMLFEFVGQQLKAPEPTAVARDTYRATLKLLVVLQHDFT
EYIAAHSDQLRMSLPPHCKQLINAILAANPASQDALSPNADQSNGSKAKETTEDDTAILL
REHGLLGVVDQALHTGPSEDGLAHMTRAINESDARETGFAHVSIKANLSVIEAIILHVGK
YAVGRLAQGGESFNPSSTDVAVLSLLMHELAPEPRYYLIVSMVNQLRFPGDMTSYFSRVL
LEIFGRDLNDPDDTEIRQQITRVLWERLIGFWPQPWGLMITVLELLKNEKYAFFDLPFVK
SSPEIIDRFHAVLQRA
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgccatcaagagcgggatctttttcaccaaatcctgcacagactctgcagaca
ggaaacagccactcgcccaacccatcgcaaggagggcaatttagctcgggcgcgagtccc
agcacgcatagcccgaccggaaccaatcccctggctaagattgtcgttgcccaaatatac
ctacttttgagtaccatcaaggaggataagggtcgcgtcaaacgggagacccaagcggat
cagctgaaaaagctcctcgatgatcacggcatggaggtgttctctaaatatttcacccgg
cttgttgccggcaacgctggccagatttttcctggcttgacgcgaccggtctcgaatcct
gggaactaccaccttctcgtcaatgaaatgcgaaacattgctcacgatgcgaaccaagca
atcaaaattgccgaatccatcgattctggtacagaggatatattccgtgattttgacctg
tcgactttcatggagcattttaaacttgatgctctcgagaaaaccatacttgcgcttgca
ttcaagcttgggtcgcgatctgacctgaagacgaaggccgatgccatcctctcaacgaac
tttcctacttttgtcaatatcatcgctcgtccagacctcgaggagcatgccgacttgacc
gactcattcattgccactatcgtcgaccgcttcattcagtaccaaccacctaactttaat
gcagcctcaaaatctgagctagctttcaaggtgaaatctcgctgggacggtgatcaagcg
cctcctccatctgaagttctcgctgccttggacttggtcagagttctagctgacaagccg
cctaatgccctcgccacctacatacagcgtacgggtgcaggtttcacgaaggatcatgat
gcctgcgtctcatacctgcagaatcgaccaactcatgtgcaactctctgaggagcaggtt
tccatcgcactcacgtacacaaccatcagccaaacgcctcaccatgaccctagcattctt
gccgcagctttacgccgggttctgccgtcaaccttccgttggcaagatgttgttacctac
ttcgatcaacgctccgcccgcatatcgtcgcagcagttcttgaggctttacaatgcgctc
gtgccgattgcacaagatagctcgtcttctctcaacattgagcaactatggggcggaaac
tgggaaaacccggaaacccagctctccttcatctgcgcattcgcgtcactgatgccggac
caacttgatgcgagcacgatacctggtttaagcccaacgctgactctcgactccttcgcc
cagtccccctctgaagttcgtcagcgcgccgcgttcgcggtgaagcacccattggtttca
gtagccgctcttgctgctgtcttccatgttgcacttcattccgttcatgcctcacaaacc
gtcgaggctaaacgcctatttcaagaggtcgttgtacccaatctcgacatttttgtcgtc
tctgctttcggggttcccaagccttggccttcgatggccaccgagacattgatttccttg
ttcgataacttcctttacaaaagatctgcagagtacgactttgtcctcgacagcctttgg
caaagggaccggcattgggtgactcaaagacttatcgacgcccacgccgtcaagccgacc
gatctgcctctaattttcgaacatgcggtaaaacacaagtggctcgaggacctcgtttcg
cttactagtggctttggtttggaccttgcagctttcgcccacgcggaaggctacctagac
cttggacactgggctcgacagaattccgaacggagcgccgaagtagcccgatccctacaa
caattcttgcttattaaggcaaatcttgagcttcaatatcaacgcccgcctgatgggcag
tccatcgtcaaatccacgacccttcaagtcaaaaccgtctcggcccttctccagatattg
gaggatttcatgcccaaggctccggtccacgacttgatcctggtgcagcggtcttgtatc
accgtctaccccagactgatcaactatggggaagggtatgacgacgttatcgatgcgaac
ggcgctgacggcaatgcattgccattggctgcaaacgcaaaaatggaggaacactacaaa
aagatgtacggcgacgagatacaggttcggaatatcgtcgacgtcctccgccggtacaaa
cactcccgcgatcccctcgatcaggacgtctttgcttgcatgattcatgggctcttcgac
gagtacgctcattacgtggactatccgcttgaggcgcttgcaaccacagcggttctattt
ggtggtatcatatcgcataagcttattgcggatctaccgctcaagatcggacttggtatg
attcttgaagctgtaagagactatcctccagatgtctcaatgtataagttcggtttgcaa
gctttgatgcaacttttttcacgtttcagagagtggcccggattctgcaagcaactgttg
cagatacccggcctccaaggaacagaagcgtggaaaaaggccgaggacgttgttcgagaa
cacgaagaagagggcagccgttcacgcaccggccccaatccacccactcacgcaactgcg
ttctctgctgagcctgtcccgaacggcggtgctgacgagccccgtgatgctgatcgccaa
gcacctccattcgcctcgatcaacgcagaaagttcattccccgcgcttgcatttgagagt
ccgtcggatgacacccagggaaagatccagttcgtcctcaacaatcttacagagaccact
cttcagtctatgtgcaaggaacttcgagacatggtcgagcagagacaccagcagtggttt
gccagccatcttgtcgaagagcgtgcgaagatgcagcccaactaccatcaagtctacctg
gatttggtgaaactgttcgaggacaaggtcctttgggcggaggtcttgcgagagacttat
ctcagcgttgcacgtatgctcaactccgaggcgaccatcactaaccctacggagcgctct
cacctcaagaatctcggtggttggttgggacttttgaccttggcacgggacagaccaatc
aagcataagaacattgcttttaagcagcttctcctcgaggcacacgacaccaagaggctg
gttgttgttcttccgttcgtctgcaaggttctgattcaaggaattcactcaacggtcttt
cgcccccccaacccctggctcatggatatcattcacctactgatcgacctttatcatcat
gcggaactcaagctcaaccttaaattcgagatcgaggtgctctgcaaaggtcttagcttg
gatcataagacaatcgagccctcgggcgagatccttaatcgtactgcagccgacgagcca
ttagaacttcttggtcacgacagcctggagtcatttgacaatctgtcgctcaacggccta
gctacaggcgttagcgcaggtttgtcaccacaaattctcccagcatcgatcccagatctg
gcgccaatgattcaaatacccccgaccaacgagatggtggttgccacctcgcgactgcat
gatatcgtgcgcactgccctcactcgcgcgttgcaagatatcattcaaccggtagttgac
agatcggtgaccattgcggcgatttcaacacgggaaatgattcgcaaggattttgctacg
gagcccgacgaaacaagaatccgcacatctgctatcaacatggtaaaagcaactgctggt
agcctcgcactcgtaacgtccaaggagccacttaggggaaacttcaccaactatctgcga
aacctttcgaatgacttgccacagggcttgcctgaagggaccatcataatgtgcgtcaat
tcgaacttggacctcgcctgtaacatcattgaaaaacaggccgaggagagggcggtgcct
gagattgaagagatgatcgaaaccgagttggacgctcgccgccgccatcgctcccagaga
ccgaacgaaccatacgtcgatccttctcttagtcgatgggcatggaccatacctaatcca
tttaagctgtcaccgagtcttagtggattgaatcctgaacaaatggcgatctatgaagat
tttgctcgtcaaccgcgggccagcaacaccacaaccgtctcacacgcgccatcggtatct
gagacaaccagatcaatggccaacgatgtattggcagatcaattcaattccctgcccatc
tccacaccagccgagacgcccgctgcgcagcacctaacttcccacatgccgtcctatggg
cctccacatctgggtggcgttgcaagtggtcggccatttcagctggacggacgagccctc
tttgagagggtccagaaactcctggttgagctacaacgtgtggcgacagaggctcgtgaa
gaccatttcgttgatttgcccaggccccatcccgttctcgacgtggtggatgcattggtt
cagcacatgatcaagacttcccagaattcagaagaatttgccctcttcgctgctgagcag
attattcagcttgtattcagccaggttgaagacaatcttgctctggagagcttggttcat
gttcttgaaaccctgcgaaaaatctctggaccggggttgaacaatcgagtcacgacactg
ttccgacaacaacctggctcgagcttccttcgcctgccgcttctggctgccctgttgcgg
actgacttgatcgactggagaaatgtcgacgttgcgctggctaagacggtgcagcaacgg
aaggaaggatccctggaattcctggaacagatgattgacctgaccctcttgggacctcgg
ccattggccctgtacggtgacttcgtacgcactcttgatgtcgcgtggactttggtccac
gatgatccggaatcacctatttctcagcggctgttggcgaagctgtcaagtcaaggcatt
tctctgagcgtgtcagcggacagcgatatcttgcaccaacgagatcaattggagtatgtt
ttcgatgaatgggttcatctctacggcaaccccaatgcgccggacgattccgcggtactt
tttgcgcggcagatgcaggccagaggcctgctcaggaacaaggacgatctattccttctc
atcagggtcgccgtcgacgtgtctgttgacaggtacgagcattttgcgcacacaacaggc
acagttgcagatgccttcatcgctacagatgcactcgcaaagatgataggcgttcttatc
aaggaccatggagcagaggacgtgggcacaacgacatcgaggccagtttatcttgactca
gtcctagccctgctgaccctcgtcctaagccaccatcatctgaagcgagttgagcacttc
aatcaaagggtattccatcgtctgctgtccgtcttgctccatgaagtgggcgcaatcgaa
agtcaagtggatgagcttgagcagcttgatatgctgctgcgaatcgcctcccgactcgcg
gacctcagtccccgataccttccaggcttcgcctatggctggctgtcgctcatccaacac
agagcattcctacctgccatcttgaaggagcgtgcaggctggtcagcgtatacgacactc
ttacgcatgctctttgaattcgttgggcaacaactcaaagctcccgagcccaccgccgtg
gctcgtgatacataccgcgcgacattaaaactgctcgttgtcctgcaacacgatttcaca
gagtacatcgctgctcattctgaccagctgcgcatgagcttgcctcctcactgcaaacag
cttatcaatgctattctcgccgcaaatccggcatctcaggatgctttgagtcctaatgcg
gatcaaagtaatgggtcgaaggcgaaagagaccaccgaagacgacactgctattctgctg
agggagcacggtctcctgggcgtagtcgatcaggctctgcacactggtccatctgaagac
ggcttggctcacatgacacgtgccatcaatgaatccgacgcccgcgaaaccggatttgcg
cacgtcagtatcaaggcgaatctatccgtcatcgaagcgatcatactccatgttggcaaa
tacgctgtggggcgtttggcccaaggaggggagtctttcaacccatcttcgacagacgtc
gcagttttgtcgctattgatgcacgagctggcgccggagccccgctactacctcattgtc
agcatggtcaaccagctgaggttccctggcgatatgactagctacttcagtcgagttctg
ctggaaattttcggtcgcgacttgaacgatcccgacgacacagagatccggcagcagatc
acgcgtgtgctgtgggaacgactgatcggtttctggccacagccttggggccttatgatc
acggttctggagcttctgaagaacgaaaagtatgcgttcttcgacctaccattcgttaag
tcgtcgcccgagataatcgatcgtttccacgctgtgcttcagcgtgcgtag
DBGET
integrated database retrieval system
