Verticillium dahliae: VDAG_08828
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Entry
VDAG_08828 CDS
T03450
Name
(RefSeq) pre-mRNA-splicing factor clf1
KO
K12869
crooked neck
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_08828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_08828
03036 Chromosome and associated proteins [BR:
vda03036
]
VDAG_08828
Spliceosome [BR:
vda03041
]
Complex B
Other components
Prp19-related factors
VDAG_08828
Complex C
VDAG_08828
Chromosome and associated proteins [BR:
vda03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
VDAG_08828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_14
HAT_PRP39_N
HAT
Suf
TPR_19
TPR_16
TPR_6
TPR_15
TPR_CcmH_CycH
ARM_TT21_5th
U3_assoc_6
TPR_9
HAT_Syf1_M
BSD
Motif
Other DBs
NCBI-GeneID:
20710291
NCBI-ProteinID:
XP_009649440
UniProt:
G2XF96
LinkDB
All DBs
Position
1
AA seq
673 aa
AA seq
DB search
MESARGPPKVKNKAAAPIQISAEQLLREAVDRQEVALQAPTQRFSDLEELHEHQGRKRRE
FEDYVRRNRVQLNNWLRYADWEIQNKELARARSIFERALDVHPNSVSLWHRYIEAEMKTR
NINHARNLLDRAVARLPRVDKMWYKYVYMEEMLGNVPGTRQVFDRWMQWHPDEAAWSAYI
KLEKRYGEFDRARDVFRRFITVHPEPRNWIKWAKFEEEYGTSDMVREVFNMAIQELDEFA
DEKLFIAYARYEAKLKEYERSRLIYKIALDKLPRSRSMALHKAYTTFEKQFGDESGVEDV
VLSKRRVHYENQVKENPKNYDIWFDYTRLEETSGDVDRIRDVYERAVAQVPPAQEKRFWR
RYIYLWVYYALWEELEAKDIERARQIYKVCLDLIPHKKYTFAKIWLLKAQFEIRQGELTT
ARKTLGQAIGMCPKDKLFRGYIELELKLFEFVRCRTLYERFLQYNPANSQTWVKFAELER
GLDDLDRTRAIFELAVGQPVLDMPELLWKAYIDFEEEEGEYESARELYERLLEKTDHVKV
WISYAHFELGASEEDEADDENEEQPVSEEAKARARKVFERGHKGMREQDLKEETVTLLNA
WLSFEKAHGSAEDVEKVQKQMPRRVKKRRLLEDDTHEEYIDYVFPADDQQSQSLSNLLAM
AQAWKQQGGGDAA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggagtcggcaaggggccccccgaaggtcaagaacaaggccgcagcccccatccagatc
tcggcagagcagctcctgcgcgaggccgtcgaccgccaggaggtcgcgctccaggcgccg
acgcagcgcttttccgacctcgaggagctccacgagcatcaggggcgcaagcggcgcgag
tttgaggactacgtgcgacgcaaccgcgtccagctcaacaactggctgcgctatgccgac
tgggagatccagaacaaggagctggcgcgcgcccggtccatctttgagcgcgcgctcgat
gtccaccccaactcggtgtcgctatggcacaggtacatcgaggccgagatgaagacgcgc
aacatcaaccatgcgcggaacctgctcgatcgcgccgtcgcgcgcctgccccgcgtcgac
aagatgtggtacaagtacgtgtacatggaggagatgctcggaaacgtgccgggcacgcgg
caggtgttcgatcgctggatgcagtggcaccccgatgaggctgcgtggagcgcgtacatc
aagctggagaagcgctacggcgagttcgaccgggcacgcgacgtcttcaggaggttcatc
accgttcaccccgagcctcgaaactggatcaagtgggcaaagtttgaggaggaatacggg
acgagcgacatggtccgggaggtgttcaacatggccattcaggagctggacgagtttgcg
gacgagaagctcttcatcgcgtacgcccgctacgaggccaaactcaaggagtacgagagg
tcgaggctcatctacaagattgctctggacaagctgccgaggtcccggtccatggcgctg
cacaaggcctacacaacttttgaaaagcagtttggcgatgagtctggcgtcgaggacgtg
gtgctgtcgaaacggcgggtacactacgagaaccaggtcaaggagaatcccaaaaactac
gacatctggttcgactacacgcgactcgaggagacgtcgggagacgtggaccgcatcagg
gacgtctacgagagggcggtggcgcaggttccaccagcacaggagaaacgattctggagg
cgatacatctacctgtgggtctactacgccctctgggaggagctcgaggccaaggatatt
gagagggcgcggcaaatctacaaagtctgcctcgatctgattccgcacaaaaagtacacc
tttgccaagatctggctcctgaaggcgcagtttgagatccgccaaggcgagctcacaacg
gcgcgcaagacgctgggacaagccatcggcatgtgccccaaggacaagctgttccgcggc
tacattgagctggagctcaagctcttcgagtttgtcaggtgtcggaccctgtacgagcga
ttcctacagtacaacccggccaactcgcagacatgggtcaagtttgccgagctggagcgt
ggcctggacgatctcgaccgcacgcgagccatctttgagctcgccgtcggccagccggtc
ctcgacatgcccgagctgctctggaaggcatacatcgactttgaggaggaggagggcgag
tacgagagcgcgcgagagctgtacgagcggcttctggagaagacggaccacgtcaaggtc
tggatcagctatgcccactttgagctcggcgcctcggaagaggacgaggccgacgacgag
aacgaggagcagcccgtcagcgaggaggccaaggcgcgggcgcgcaaggtcttcgagcgc
ggccacaagggcatgcgtgagcaggatctcaaggaggagactgtgacgctgctgaacgcg
tggctgtcgtttgaaaaggcgcacggctcggcggaggacgttgagaaggtgcagaagcag
atgccgcgccgcgtcaagaagaggcggctgctggaagacgacacgcacgaagagtacatc
gactacgtgttcccggccgacgaccagcagtcccagagcctctcgaacctgctggccatg
gcgcaggcatggaagcagcagggcggcggcgatgccgcgtga
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integrated database retrieval system
