Varroa destructor (honeybee mite): 111252019
Help
Entry
111252019 CDS
T07383
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
vde
Varroa destructor (honeybee mite)
Pathway
vde03008
Ribosome biogenesis in eukaryotes
vde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vde00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111252019
09123 Folding, sorting and degradation
03018 RNA degradation
111252019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vde03019
]
111252019
03009 Ribosome biogenesis [BR:
vde03009
]
111252019
03016 Transfer RNA biogenesis [BR:
vde03016
]
111252019
03036 Chromosome and associated proteins [BR:
vde03036
]
111252019
Messenger RNA biogenesis [BR:
vde03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111252019
mRNA degradation factors
5'-3' decay
5' exonucleases
111252019
Ribosome biogenesis [BR:
vde03009
]
Eukaryotic type
Pre-60S particles
RNases
111252019
Transfer RNA biogenesis [BR:
vde03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111252019
Chromosome and associated proteins [BR:
vde03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111252019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
111252019
NCBI-ProteinID:
XP_022665051
UniProt:
A0A7M7MBX5
LinkDB
All DBs
Position
Unknown
AA seq
1610 aa
AA seq
DB search
MGVPKFYRWISERYPCLSTVAREYQLPDFDNLYLDMNGIIHLCSHPNDTDAHFRISEEEI
FKNIFDYIDFIFRMVKPRKCFFMAIDGVAPRAKMNQQRDRRFRAAKEAEEMEKEAKEKGE
ILPTESRFDSNCISPGTEFMERLHDKLKYFVVKKLSEDAVWQVEGLKVYLSGHNAPGEGE
HKAMDFIRYVRSQEGYDPNTRHCIYGQDADLIMLALCTHEPHIALLREEVVFGKRTEKRI
QSADKVTFHILHISLLREYLDHEFAQLKEPGILKQGYNLENIIDDWLLMCFLVGNDFLPH
LPNLHIAHDALPILHQTYCDVMPDLDGYLHDRGQLNLRNFEVFMRKLGERDIELFKNQKT
GQRYLKGKVSKETLDAVRTKFPNLDIPVSDSDELSSDDTSQEEFLQHKRHYYMTKMGYSE
VTEKELREQTECYIRAVQWNLHYYYNGVQSWSWYYPYHYSPYISDIKDFGDLKLGFEMGK
PFLPFQQLVSIMPAASSALVPQAYRGLMLNPDSPLREYFPDTFETDLNGKTQQWEAVVLI
KYIEEDILLNSMAAYDNRLSEREKSRNQHGPHMLFEYSPKRQKSFPSPKHKCFPHIKISH
AKCTEVPNDTFRIQKHTIKKGRLANTKDSLYFPGFPSLRYIQHKTRLVKEGCTVFQQPSR
DYNMIIDVTNHSTDITRYAKLVGKIVHIDYPHLRQALVTKISDGKTVYSAEGKSLLSETE
EKDCARKVENLQSKLRIRWGIDTGEGNQKLLITCKPLVGRKYIYKNDDQVTIERQWAEQE
KIVLHSTMVCGLREHEQEVAQFQTISDVFVKDKLVFLLSPNEYGMKGTICGYQKGGYLVV
ESRFREEPDFTEIRKREPKLRKRNYLPAFRLARELGLDSHLVARLTGCIQIQLNSTEADS
SQHVNIGMNLKFNKKNEEVVGFSKKVTTQEGKTEWRFSQDTVAALRELIMTFGDFYLALK
QFIGMDKIPLEKCFPGESYKDGLNKAREIAKWIKDQPFSKAPHQTSGAIVFDEGVIEAIQ
QCVDEHLKSPEIEQTVKVHVTDVYLPNVCVNLFVPDKRAYFCMYDRVVNVRPDIAVPLGL
KGTVIGIHRGEQEDEREATYEVLFDKEFATGIQSHGVKGRRVATLSVVSLINITHGQRML
DESQKSEMLRREHGAYQAGNPITGRAKQQQTPQQKQQQSKQQYQQNVQSDLRKSKNVAEE
KSNSRPLQKDHSRNRLAQSTGLISGSKQEGSPAVRAKKNVGSSGKFETAFPDPVGMETSS
TDNIITFLFNSISGVKASLGQNPNPVSLSTAPTLVRPMAVEATLSTKTENSGNASNYTQG
IPITVTQLFGLSQTGQLTETEAETKQEHHNISAKMKQKYGDFSMQQATPSKSVSNARQPS
ANYFNQQGQQLQQRQQHQKQQHWDQGHTAHGLPVNLIPGAWKENQLKEVYGYQKYQRGLQ
KDLNEPHYHPQQTSRKNHTDQCQKNKSPHHQQSKRQDQHEDHCKDPSHNRQQRASAAQAN
KGSFAFIPSQVMMAEAKGRTAAQKGAAKAASTQGGGETKHSDPMRHDKTPTLHTTDQRQR
SENVSSSAGRSAAGPSAGPPRTGTSVEAKVNRTLRGRRMGAKFGDAEVNQ
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcccaaattttatcgttggatatctgagagatatccctgcctgtcaacagtg
gctcgagaatatcagttacccgatttcgacaatctctacctcgacatgaatggaattatt
catttgtgctcacatccaaatgacacggatgctcatttccgtatctctgaagaagaaatc
ttcaagaatattttcgattacatcgatttcatctttaggatggttaaaccgagaaaatgc
ttttttatggccatcgatggtgtcgcaccacgcgctaaaatgaaccagcaaagagatcgt
cgtttcagagcggcgaaggaggcggaagaaatggaaaaagaggccaaagagaagggtgaa
atattgccgacagagagccgttttgactctaattgcatctcgccaggaacggagttcatg
gagaggcttcacgacaagctgaaatattttgtcgtaaaaaagctctcggaagatgcagtg
tggcaagtagaaggtctaaaggtttacctaagcggacacaacgcgcctggtgaaggggag
cacaaagccatggactttatcagatacgtcaggtcacaagaaggttacgatccgaatact
cgtcactgcatttatggacaagatgccgatttgatcatgctagcactctgcactcatgag
ccacatattgcgctacttcgagaggaagtggtttttggtaaacgaactgagaagcgtata
cagagcgcggataaagtgacatttcacatattgcacataagtctccttcgggaataccta
gatcacgaatttgctcagctgaaggaaccaggaattttaaagcagggttacaaccttgag
aatattatcgacgactggcttctcatgtgttttttagtcggtaacgattttctgccgcat
ttgccaaatctacacattgctcatgacgctctaccgattttgcatcaaacttattgtgat
gttatgccggatcttgatgggtaccttcatgacagagggcagctaaacttgaggaacttc
gaggtattcatgcgcaagttgggtgaacgcgatatagaattattcaaaaaccaaaagaca
ggtcaaagatatcttaaaggcaaagtgagcaaagaaacgctggatgcggtcagaacgaaa
ttcccaaatctcgacattcctgtctccgacagcgatgaactatcaagtgacgacacctcg
caagaagaatttctccaacataagcgacactactacatgacgaaaatgggctacagtgag
gtgacagaaaaggaacttcgcgagcagacagaatgttatattcgagctgttcagtggaat
cttcactattattataatggtgtacagagttggagctggtattacccctatcattattct
ccgtacatctcagacatcaaggattttggcgatcttaagcttggctttgaaatgggtaag
ccatttctgccttttcaacagcttgtgtccatcatgcctgccgcatcaagcgcgttagtc
ccgcaggcgtacagaggtttgatgctcaatcctgattcaccattacgggaatatttcccc
gacactttcgagacggatctcaacggtaaaacacaacaatgggaagcagtcgtgttgatc
aaatatatcgaagaagacattctgcttaattctatggcggcatatgacaataggctttca
gaaagagagaagtctcgcaaccagcacggaccgcatatgttattcgaatacagcccaaaa
aggcaaaaatcgtttccgtctccaaaacacaagtgctttccgcacataaagatatcgcac
gcaaagtgcaccgaagtacccaatgacacgtttcgcatacaaaagcacaccattaaaaaa
ggtcgtttagcaaacacaaaggacagcctatactttccgggttttccctcccttcggtat
atccagcacaaaacccgcctggtaaaggaaggatgcaccgtgtttcagcagccgtcgaga
gattataatatgataattgacgttacaaatcatagtaccgatatcaccagatacgcgaag
ttggtgggaaaaatcgtccatattgactacccacaccttcggcaggcgcttgttacgaag
ataagtgacggcaagacagtctacagtgccgaaggaaaaagcttacttagcgagactgaa
gagaaagattgtgctcgcaaggtcgaaaatctgcaatccaaacttcgcattcggtggggt
atcgatacaggcgaaggaaatcagaagctactgattacgtgtaagccgcttgtcggaagg
aagtacatctacaaaaatgatgatcaggtaaccattgaacgtcagtgggcagagcaagag
aagatagttctacacagcacaatggtttgcggtttacgggagcatgaacaagaggtggcg
caatttcaaacaattagtgatgtctttgttaaagataagctcgtctttcttctcagcccc
aatgagtacgggatgaagggaactatctgtggatatcaaaaaggaggctatctcgtggtg
gagagtcgatttagggaagagcctgattttactgagatccgtaagagagaaccgaagcta
cgaaaaaggaattacttgccagcatttagattggcgcgtgaacttggacttgattcccat
ctagtagctcgactgacgggatgtatccaaattcagctaaattcgacggaggctgattcg
tcgcagcacgtcaacattgggatgaatctgaagtttaacaaaaagaacgaggaagtagta
ggcttttcaaagaaggtaacaactcaggaaggaaagaccgaatggcgtttctcgcaagat
acggttgcggctcttcgggagctaatcatgacgttcggcgacttttatctggcgttaaaa
cagttcatcgggatggacaagattcccttagaaaaatgtttcccgggagagtcctacaaa
gatgggttgaacaaagcccgcgaaattgccaagtggatcaaggaccagcccttctctaag
gcgccacatcagacttctggagccattgtgtttgatgaaggcgttatcgaagcaattcaa
cagtgtgtggatgaacatcttaaaagcccggagattgagcaaactgttaaggtacacgta
accgatgtctacttgcccaacgtttgcgttaatttattcgttcccgacaagcgcgcgtat
ttctgcatgtacgatcgtgttgtcaacgtgcggcctgatatcgctgtaccactaggtctc
aagggtacagttatcggcatccatcggggcgagcaggaagatgagcgtgaagcaacgtat
gaagttctcttcgataaagaatttgcgaccggaattcagagccatggagtcaagggtcga
cgggtcgcaacactatcggttgtttcgctaataaacatcacccatggacagcggatgttg
gacgaatctcagaaatcagaaatgctgcgtcgcgagcatggcgcatatcaggcgggaaat
ccaataacaggacgtgccaagcaacaacagactcctcagcagaagcagcagcagtcgaaa
cagcaatatcagcaaaacgtacagtcggacttgcggaaatctaaaaacgtagccgaagaa
aagtcgaacagtcgtccgctacaaaaagaccattctcgaaacagattggcccagtctaca
ggccttatctctggtagcaagcaggagggttcccccgccgttagagcaaagaaaaatgtg
ggttcatctggaaagtttgaaacagctttcccggatccagttggcatggaaacatcttca
acagataacatcattacctttcttttcaactcaatatcaggcgtgaaggcatcacttggc
caaaacccaaatcccgtttccctatccacggcgcctacgctcgtcagacctatggctgtg
gaagcaactctgagtacgaaaacagaaaattcagggaatgctagtaattatacgcagggc
attcctataacggtgacgcaactttttggcttgtcccaaacggggcagctaaccgaaaca
gaggcagagacgaagcaggagcatcataatatttcagcgaagatgaagcagaagtacggt
gactttagcatgcagcaagccacaccaagcaaaagcgtgtctaatgcaaggcagccttca
gcaaattactttaatcagcaaggccaacagctacaacaacggcagcagcaccagaaacaa
cagcactgggatcaagggcatactgcgcatggtctgcccgtcaatctcattcctggggca
tggaaagagaaccaactaaaggaggtctatggttatcaaaagtatcagaggggtctccag
aaggatcttaatgaaccacactatcatccccaacaaacgagccgtaaaaatcatacggat
caatgtcagaagaacaaatcgcctcatcatcaacaaagcaaacgtcaggatcagcacgaa
gaccattgcaaggatccttctcataacagacaacagcgagcgagtgcagctcaggcaaat
aaaggcagcttcgcgttcatcccatcgcaggtaatgatggccgaagccaagggacgtact
gctgctcaaaaaggcgccgcaaaggcagcgtcgacccagggtggtggcgagacgaagcac
tcagatccgatgagacatgataaaacaccgactttacatacaactgatcaacggcaacgc
tcagagaacgtgtcgtcctctgcaggcagaagcgccgccgggccaagcgcaggtccgcct
cgtaccggaacaagcgtcgaggccaaagtgaatcgcactcttcgaggccgtcgaatgggg
gctaaattcggcgatgccgaagtaaatcagtaa
DBGET
integrated database retrieval system
