Vollenhovia emeryi: 105558958
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Entry
105558958 CDS
T06016
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
vem
Vollenhovia emeryi
Pathway
vem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105558958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105558958
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
105558958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RBD_AKAP-17A
TDP-43_C
Motif
Other DBs
NCBI-GeneID:
105558958
NCBI-ProteinID:
XP_011862317
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR
LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKLRCTDLIVLGLPWKTTEQ
NLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVP
NSKEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPFRAFSFVTFLDPEV
AQSLCGEDHIIKGVSVHVSNAAPKSEGNNKNFNNQVNSNMRGGRGAPGPVDNNVQGNYQG
NRYMGHSGNNMGPNGWNNPGNRGNLDMPNLQALGITGQNNGGGGGGGMSNPLAMGGLNLS
ALPVNPALVAAALNQASWGLIGNLQNQGNDQGYSNQPGPPGQPPSGNNTIGNSGNSGFLS
WMNQGGGDGNTGNPGTGGPGPNNPNASQGAWQNHPGQRDQKSNTFLKYE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatatatccaggtggccgaggacgagggcgaggagcccatcgagttgccgaca
gaggacgacaccacgctgctgctcaccaccctgtccgcccagttccccggcacctgcggc
ctgaagtaccgcaacccggagtcgcggacgatgcgcggcgtccggctggtcgacggccgt
ctacatccgcccgagaacggctggggcaaggcgatttacttctgcgtatttcccaaagag
aacaaacgtaaatctgatgacaatttggaaaattccacagctaagactaaaagaatggaa
accaagttgcgttgcaccgacttgattgtactcggtttgccgtggaaaaccaccgagcag
aacttgcgcgagtatttcgaaacgttcggcgaggttttaatggcacaggtaaagaaagat
gcaaaatccgggcaaagcaagggatttggctttattcgatttggaagttatgagtcgcag
ttgagatgcctcgctcaacgtcatatgatagacggcagatggtgcgatgtcaaggttcct
aacagtaaggaaggaatgatacaacaagtaccctgcaaggtattcgtcggccgctgtact
gaagatttaaccgcggacgacctacgagattatttctccaaattcggcgaagtgacggac
gtgttcatcccgaaacccttccgcgcgttctcgtttgttactttcctagatcccgaggtc
gcccagtcgctctgtggcgaagatcatattatcaagggcgtctcggtacacgtctcgaat
gccgcgcccaagtccgagggcaacaataagaatttcaacaatcaagtgaactcgaacatg
cggggcggcaggggcgcgccgggacccgtcgataataatgtccagggcaattatcagggt
aatcgttacatgggccattcgggcaacaatatgggcccgaacggctggaacaatcccggt
aatcgtggcaacctcgacatgccgaatctacaggctctaggtatcaccgggcagaacaac
ggcggtggcggcgggggcggtatgtcgaatccgctggcgatgggtggtctgaatctgtcc
gcgctgccggtcaacccggcgctggtggccgccgccctgaaccaggcgtcctggggtctg
atcggtaacctgcagaaccagggaaacgaccagggttattcgaaccagccgggcccaccg
ggccagccgccctccggtaacaataccatcggcaacagcggcaattccggcttcctcagc
tggatgaaccagggcggcggcgacggcaacacgggcaatcccggcaccggcggccccggg
ccgaataacccgaacgcgtcccagggcgcctggcagaatcacccgggccagcgcgaccag
aagtcgaatacctttctcaagtacgagtaa
DBGET
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