Vollenhovia emeryi: 105565098
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Entry
105565098 CDS
T06016
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vem
Vollenhovia emeryi
Pathway
vem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105565098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105565098
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105565098
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105565098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105565098
NCBI-ProteinID:
XP_011873382
LinkDB
All DBs
Position
Unknown
AA seq
2400 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKRNFEDSCQEISGLVQWHGLEAERHSLRCLISSVDFSKG
EPSDSSAKDYFQAKLLKQECNSLLSKPAFISTLCFAIDNPLHQQKTLNSSPKFFVNLKKT
LGLTLVQEVAFAIALQHSENTEIRALALEHTQKQLPELIKNYINSETSNKHHEGGLHDSL
PQVLHLILGQALHTANPYSLLVETKENFLKHLRRDFPRELVPVVLAPFLYPEDEETLQFK
IELNMAVTQMDSSTLVELIMELGYSFTSSIEECRSALTSLGAREISPACISRVLSQMART
CTNLDDAGGLQTFWGNSTASQDSNKEKPLDSTIPTTWNVEVFVLTLKEIQSTLSWNDVIL
KLDHAEFLIKDRQGLNLLFTGLKLGLQHQGYPPDMFPVELLYRHWDNIEGQLSLIQHILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMADRGLYSPVQEIFK
WPLQHCPDVLILALLQINPPFTLLRQDMFSTLLPIFLGNHPNSAVILHHAWHANNPKTKT
LIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEIFVTACIKFLQRRCPQVMGPIKEDPTVPKATQLPQETLTTILACLQV
CTGNVSQDLSEVIMTMVQNCSVMLQSKSTMNRPQPPGVLRHRLDPPFNPATLGSQLFAPK
QVDSLGNLNTSLASMALGPPSTSTFNLPGGLGPLVSAPGSPSRLMGPSPSPFPMLPLSSQ
LHSGPVGTQGPSVLSTGTIGGLGRLGPPTGIEKRIQERETSNLFPDMGQNVSKEIEDEAN
SYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYPEKE
LQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRLKEY
QTYCEHVRTISHFAEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTMTTT
TITTSTTQAKPSTTPTTTTLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDKTA
FIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKLPE
VNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLKSL
LVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNLK
FEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHPNKKVETTNNQQPPQGPIEELV
GPTTSGTINPQTAPPTNTTPSLPAGPPEPRFNYMDISVTGIANISQHITANNQLPLFQTH
PHMKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHMAR
NLTAGMAMITCRDQILASISTNLKQAFLAALVSPTQQQKELVEQAASVVAADNMELACAF
VQKTAIEKAIPEMDKRLMNEIELRKLARQEGRRYCDPLAKYQAERMPEQIRLKMGGVTPQ
QMAVYEEFARNIPGFLPLSERDTQALFIPKPISEAPLTAFTPNSAVAVATAQQVAYATVA
VSNDEVGALLEKLASDVEVLLAAMVPAVLPQQHGILHSLLESIVLTRRSRDINAAMTLLK
KAVEGLLDGPIFNSGVMETESLTQRYKDLHLRILKCLQDPRAYGMQWTNKHVTRCLIECR
EEYRYNFDAVDALIRSHLISLPQYDLAIAQAVESGNVMATLFAMQLVQLYLIDERQATHV
TETDLFHTIEILARMSHHRSLPEGISLYRLTTLVESLRANHDSGVLVDRAPAGPTAHIHS
GILQVRARDYEADPPGLMDKTEFLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRTLTETGLAPSHIRAKCFHSLDAFVRLVALLVKHSGDATN
THTKINLLNKVLGIVAGVLLQDHELRGAEFQQLPYHRIFIMLFLELCAPEPVLEAVNFQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLQEITLAPRVLTNFASTIQPLNFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIQFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTETEIPE
NT seq
7203 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacagatcagttatttggttgcgaatttg
agtaagagaaattttgaggacagctgccaggagatatcggggttggtgcagtggcatggt
ctagaagcagaacgacattctttgcgctgtctgatctcgagcgttgacttttccaagggc
gagccgtcagattcgagtgcgaaagattatttccaagccaagttgctgaagcaagagtgc
aatagtttactgagcaagcccgcttttatatctactttgtgctttgctatagataatcct
ttacatcagcaaaagaccttgaattcctcgccaaagttttttgtcaatttgaaaaaaaca
ctcggcctgaccttggtgcaggaggttgcgtttgctattgcgctacagcactcggagaac
actgaaattcgtgctctggccttggagcatacccagaagcaactgcctgaactgataaag
aattacataaattcggagacgagtaacaagcaccacgagggtggtttgcacgactcgttg
cctcaggtccttcatctgatactcggtcaagctctccatactgccaatccgtacagtctg
ctcgtggagacgaaagaaaattttcttaaacacttacgacgcgactttccccgcgagctg
gtgccagtggtgttggcgccattcctgtatccggaagacgaagaaactctgcagttcaaa
atcgagttaaacatggctgtcactcagatggatagcagcactcttgtggagttgattatg
gaattaggatatagttttactagtagcatagaagaatgtcgatcggcgttaacgagttta
ggcgccagggagatatccccggcgtgtatttctcgtgtgttgtcacaaatggcacgtacc
tgtaccaatcttgacgatgctggaggcctacaaacgttctggggcaactcgactgcctcg
caggactctaataaggagaaaccattggacagtaccattcccacaacgtggaacgttgaa
gtgttcgttttaaccttgaaagagatacaatccacattgtcttggaacgatgtaatcttg
aagttggaccatgcagagttccttatcaaggataggcaaggtttaaacttgctgtttaca
ggtctcaagctgggcctgcagcatcaaggatatccaccggacatgttccccgttgagctc
ttgtacagacactgggataatatagaaggccaattatccttgattcagcacatccttaag
tgcccggacatattttgcttcgctgattatccgtatcactcggtgacggtcgatgtactg
aaagcggctcccgagggcgatagcaaggaaggtcaaacgtggcggtcgttgaatatagtc
gagctgcttttacacatggccgatagaggcttgtacagtcctgtgcaggagatcttcaaa
tggccgctccagcattgcccggatgttctcattctggcgttattgcagataaatccacct
ttcacgttgctgagacaggacatgttttctacactattgccaatctttctcggcaatcac
ccgaattccgctgtgatactgcatcacgcgtggcatgctaataatcccaagacaaagaca
ctcataatgcatgccatggcagattggtatacgcgtggtgatcacgatcagaccagatta
tcacgaattttggatgtcgcgcaggacttgaaggcactctccgccttactcaattcgcaa
tctttcccattcgttattgaccttgcctgcctggcctcccgacgggagtatctgaaactg
gagaagtggttaacggacaagattagggatcacggagaaatttttgtcactgcatgcatc
aagttcctacaacgacggtgtccccaggtcatgggacctatcaaggaagatcctacagtt
ccaaaggccacccaactgccccaggagacactcactacaatcttggcttgcttgcaagtt
tgcaccggaaacgtctcgcaagatctctcggaggtaataatgacgatggtgcagaattgc
agtgtaatgctacaaagtaagagcactatgaacagaccacaaccaccgggagtgctgagg
catcgattagacccgccatttaatccagcaactttgggaagccaactatttgccccaaag
caagtggattctcttggaaatcttaatacaagtctcgcttccatggcccttggacctccg
agcacctccacgttcaatttgcctggtggcctaggtcctctggtctcagcgcctggatcc
ccctctcgactgatgggaccttctccaagtccatttcctatgttgccgttatcttcgcaa
ttacactcaggtccagttggtacgcaaggaccgtctgtcctctccactggtacaataggt
ggactgggacgcctcgggccgccaactggaattgagaaaagaatccaagaaagggaaacc
tccaatttgttcccagatatggggcaaaatgtctccaaggagatcgaggatgaagctaat
agttattttcaacgtatatacaatcatccaccacatccgactctgtcgatcgatgaggtg
ctcgatatgctgaaaaagtttcaagactccggcatcagacgggagagagaggtatttaac
tgtatgctgcgaaatttattcgaagaatacagatttttccctcagtatccggaaaaagag
ttgcaaataacagcacaattgttcggtggaatcatcgagaggggtcttgtcaacagttac
atgacccttggattagcgttacgatttgtccttgatgcgcttaaaaaaccggaaggctca
aagatgtattactttggcataacggctttggatcgattcaagagtcgtttgaaggaatat
caaacgtactgcgagcacgttagaacgatttcacatttcgccgaattcccgcctcatttg
gtggaatatatagagtatgggttacaaggacaggaaccaccgtcgaggccgcagggtcca
aaaactctagcggcaatgctggctccagttacaaccccgtacaaaaccatgactacaact
accattacaaccagcactacgcaagcaaaaccgtctacgaccccgactacgacgactctt
tcggctagaccctctatgccctcagttgctaatgcgactaatatcgatacgctgctcgtg
gcgacggacaaagaggaaaaaattacgacaccgccggaagccttgcaggacaaaactgct
ttcatcttcaataatctcagccagctgaatttgcaacagaagtgtgacgagatccgcgaa
atcgtcacggaggaatactggccgtggatggcacagtatctagtgatgaaacgtgccagc
atagaactgaactttcatgctctgtactcgaactttctggattgcataaaattacccgaa
gtgaataaaatggtcacgagagaaacgtttcgaaatatcaaggttctcttacgaagcgat
aaaggaatagctaacttttctgatcgatcgctgttgaaaaacctcggacactggctcgga
atgctaacacttggtagaaataagcctattttacagatagatatagatctaaaaagctta
ctcgtggaagcatatcacaaaggccagcaagaacttctctacgtagtgccatttgttgca
aaagtacttgagagttgtgcgaaaagtcgtgtcttccggccacccaatccgtggactatg
gcaattatgaacgttctagccgaactacatcaggagcctgatttgaaattgaatttaaag
ttcgagatagaagtactttgcaagaatctgagcattgacgtaggggaactaaagccagtc
atttacttgaaagaccctgagaaattgcgcaatctagaatatcagttgtcacatccgaac
aagaaagtggagacaactaacaatcaacaaccacctcaggggcctatagaggaattagtt
ggaccgacaacaagcggcactatcaatcctcaaactgccccacccacgaatacgacaccc
tctttaccggctggtccaccggaaccgcgattcaattacatggatatatctgtaacgggc
attgcaaatatatctcaacacattactgccaacaatcaattacctctattccaaacgcat
cctcatatgaaacaattcattcgcccggcggttgaaagagcaattcaggagtggatccat
cctgttgtagatcggtctattaaaattgctcttacaaccagcgagcaaattgtgaggaaa
gattttgccttggatccggaagaggtgcgaatgcgtacagctgcacgtcacatggcgcgt
aatctgaccgccggtatggctatgattacgtgccgcgatcagatcctggcatcgattagc
acgaatttaaaacaggcctttctcgcggcgttagtcagtccgactcagcagcagaaggaa
ctagtcgaacaagcggcaagtgtagtcgctgccgataacatggaactcgcgtgtgcgttt
gtacaaaagaccgctattgaaaaggcaatacccgaaatggacaaacggctgatgaatgaa
attgagctgcgaaaactcgcccgacaagaagggagaagatactgcgatcctcttgccaag
tatcaagccgagaggatgccggaacagataaggctgaaaatgggtggtgttacgcctcaa
caaatggccgtatatgaggagtttgcgagaaatattccaggatttctcccgctctccgaa
cgagatacgcaagcgctctttataccgaagcctatttctgaggctcctctcactgcattc
acacccaactcagcggtggcagtcgctacagcacaacaagtagcctacgcaactgtagca
gttagcaacgatgaagtgggtgcactgctagagaaacttgcgtcggacgtcgaggtcctg
ttggccgctatggtacctgcggtactgccacaacagcacggaatccttcacagtctcctg
gaatcaatcgtactcacaagaagatcgagagacatcaatgcggcaatgacattgttaaag
aaagctgttgaaggtttgctggacgggcccatattcaacagtggcgtcatggagaccgag
agtttaacacaacgctacaaagatttgcacctacggatcttgaagtgtcttcaggatcca
cgtgcatacggtatgcaatggaccaacaagcacgtgactcgttgtctaatcgaatgccgg
gaagaataccggtataatttcgacgccgtggacgccctcataagatctcacctgattagt
cttccgcagtacgacttggctatagcgcaagctgtagagtcgggaaatgtcatggcaaca
ttatttgctatgcagttggttcaactttatttgattgacgagaggcaggcaactcatgtc
accgaaactgatttattccacactattgagatattggctcgaatgtcacatcaccgctcc
ttaccggaaggaatatcgttgtatagattgacaacccttgtggaatctctacgtgccaat
cacgattctggggtattggtagacagagctccagcgggacctacggcgcatattcattcc
ggaatcctgcaggtgagagctcgcgattacgaagcagacccacccggactgatggataag
acggaatttctattacgtgaatgggtgcagatgcatcacaatcctcagtacgcgcgagat
cccacgaaagcgttcagtatattcgttcatcaaatgaatatccacggcatcttgaagacc
gacgatctcatcacaagattcttcaagctgagtacacagatgtgcgtcgacctttgctat
cggactttaacagaaactggattggccccctcgcacatccgcgcgaaatgttttcactcc
ttggatgcatttgtacgactcgtcgcattgctggtgaagcactcgggcgatgctactaac
acccataccaagatcaatcttttgaacaaggtgctcggcatcgtggctggtgtgttgtta
caggaccacgagttacgcggcgcagaattccaacaattgccgtaccacaggatcttcatt
atgctcttcttggagttgtgtgcgccggagccagttcttgaagctgtaaattttcaagtt
ctgactgcattttgccacactttgcacattctgagaccagcaaaagcatcgggtttctgc
tacgcctggctggagttggtttcccaccgcgtcttcatcggtcgcatgctggctatcacg
ccgcagcaaaagtgctggggaatgtacgcgcagctgcttatcgatttattcaagtacctt
gcaccatatctgcgaaatgcggagctggcgaagcctgtgacgagtttgtacaaagggaca
ttacgggtgctccttgttttgttacacgatttcccagagttcctttgcgattatcactat
gggttttgcgatgtgataccaccaaattgcatacaaatgagaaacctgattttgagtgcg
ttcccgagaaatatgcgtctacctgatccgttcacgcctaatctgaaagtggacatgtta
caggaaataactctcgctccgcgtgttctcactaatttcgcgtccacgattcagccatta
aacttcaagaaagagctcgactcttatctgaaggctcgcgcgccggtcaccttcctgtcc
gagctccgcagcaatttgcaggtgtctcaagaggccggtgtgcgttataacattcagttg
atgaatgctctggtgctctacgtaggcacgcaggctatacaattcatacgcagcaagggt
catactcctaatatgtctaccatcgcgcactctgcacacatggatatctttcagaatctg
gccgtcgacctggatacggaggggcggtatttgttcctgaacgccatagcgaatcagtta
cgatatcctaacagtcacacgcattacttcagttgtacaattctctatctattcgctgaa
gcaaatacggaagcgatacaagagcaaataacaagggttcttttggaaagacttatcgta
aaccgaccacacccgtggggattgctcatcacctttatcgaattgatcaagaatccaacg
tataaattctggtcacacgaatttgtacattgtgcgcctgaaattgagaagttgttcgaa
tctgtagctagatcgtgtatggtgcagaaacaagtgcccacggagacggagattccagag
tga
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integrated database retrieval system
