Vibrio europaeus: IXK98_20290
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Entry
IXK98_20290 CDS
T07114
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
veu
Vibrio europaeus
Pathway
veu03030
DNA replication
veu03410
Base excision repair
veu03420
Nucleotide excision repair
veu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IXK98_20290 (ligA)
03410 Base excision repair
IXK98_20290 (ligA)
03420 Nucleotide excision repair
IXK98_20290 (ligA)
03430 Mismatch repair
IXK98_20290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
veu03032
]
IXK98_20290 (ligA)
03400 DNA repair and recombination proteins [BR:
veu03400
]
IXK98_20290 (ligA)
Enzymes [BR:
veu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IXK98_20290 (ligA)
DNA replication proteins [BR:
veu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IXK98_20290 (ligA)
DNA repair and recombination proteins [BR:
veu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IXK98_20290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IXK98_20290 (ligA)
MMR (mismatch excision repair)
DNA ligase
IXK98_20290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IXK98_20290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QPG35780
LinkDB
All DBs
Position
1:complement(2523068..2525077)
Genome browser
AA seq
669 aa
AA seq
DB search
MSTEIQEKLNQLRQTLHYHGVKYYVEDNPEIPDAEYDRLMRELMGLESQNPEFVTIDSPS
QRVGGAPLDGFGSVTHEIPMLSLDNAFDDGELESFHKRMGDRIPSAAFDVFCCEPKLDGL
AVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMPKA
GFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGVELSSSH
YERFIQLKGWGLPMCPETKRVNNLDEVKAYYQDILERRESLAYEIDGVVIKVDEIALQEQ
LGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLDVMVGDTVVIRRAGDVIPQIVSVVTDRRPDSAREIVFPENCPVCKSQVERIE
GEAVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVDALNKAKQTTLARFLYSLGIREVGEATAANLAQHFKTLDLVK
AASHEKLVEVQDIGDIVASHITAFFAQDKNQSVIDELIEQGVNWPDIEEKDEDAPQPLDG
KTVVLTGSLSQLTRSDAKSALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIR
TEEDLISLM
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagagattcaagagaagcttaatcaattgcgtcaaacgcttcactaccatggg
gtgaagtactacgtcgaggataatccagaaataccggatgctgaatatgacaggctcatg
cgcgagcttatggggcttgagtctcaaaacccagaatttgtcaccatagactcaccaagt
cagcgagtcggcggcgcgccattagacggttttggctcggtcacgcacgagattccaatg
ctttcattggataatgcttttgatgatggcgagctagaaagcttccataaacgtatgggc
gaccgtattccaagcgcggcgtttgatgttttttgttgtgaaccaaagctagatggcctc
gcggttagcttgctgtatgaaaacggtgtgctcgtccaagctgcgacacgcggtgacggt
gcaacaggtgaaaacatcaccgagaacgttcgtactatcaaagctattccattgaagctt
caaggtgaaggttggccagcacgcattgaagtacgtggtgaagtgttcatgcctaaagcg
ggttttgacaaacttaacgagcaagcgctaaagaaaggtgagaaagttttcgttaaccca
cgtaatgcagcggcaggcagtttgcgccaattggattcacgtattacagcaacgcgccct
ttgagcttttatgcctacagtgtcggtgtggttgagggtgttgagctctcttcgagtcac
tatgaacgattcatacagctgaaaggctggggattgccaatgtgcccagagacaaagcgc
gtaaacaacctcgatgaagtgaaagcctattatcaagatatcctcgaacgccgtgagtcc
ttagcgtatgaaatcgacggggtggtgattaaagttgatgagatcgctcttcaagaacaa
cttggttttgtcgccagagcgccacgttgggcgattgcttacaaattccctgctcaagaa
gaaatcaccacgttaaatgatgtcgagttccaagttggacgtacaggcgccatcacgcct
gttgctaagctggagcctgtatttgtaggcggtgttaccgtcagtaatgcaacccttcac
aatgccgatgagatagaacgtttggacgttatggttggcgatacggttgtgatacgcaga
gcgggtgacgtgatccctcagattgtttctgtggtgactgatcgtcgaccagatagtgct
cgtgagattgttttcccggaaaactgtcctgtgtgtaaatcacaagtggaacgaatagaa
ggcgaagcggttgcacgttgtagtggtggtctcgtttgtcaggcgcaacgtaaagaagcg
ttgaagcattttgtatcccgtaaggcgctagatgttgatgggctaggtgagaaagtgatt
gagcagcttgttgatcgcgaaatggtagaaacaccagccgacctgtttaaactatctgcc
ggtgtgattacagtgcttgaccgaatggggccaaaatctgcgcaaaatgtggtagatgct
ttgaacaaagctaagcaaacaaccttagctcggttcttatattcgttaggtattcgtgaa
gtaggcgaagcaacggcggcaaacttagcacagcattttaaaactttagacttagttaaa
gctgcaagccatgaaaagcttgtcgaagttcaagatattggcgatatagttgcgagtcat
atcacggcattttttgctcaggataaaaaccaaagtgtgattgatgaactgattgagcaa
ggggtaaattggcctgatatagaagagaaagatgaagacgctcctcagccgcttgacggt
aaaactgtggtcttaactggctcactatctcagcttactcgttctgatgcaaaatctgct
ctgcaagcactaggggcaaaagtaaccggtagtgtttctaagaaaactgacattcttttt
gctggtgaaaatgcaggctctaagcttgctaaagcgcaagatttgggcattgaaattcgt
accgaagaagaccttatttcattaatgtaa
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