Vibrio europaeus: IXK98_22690
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Entry
IXK98_22690 CDS
T07114
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
veu
Vibrio europaeus
Pathway
veu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IXK98_22690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
veu03021
]
IXK98_22690 (rpoC)
03400 DNA repair and recombination proteins [BR:
veu03400
]
IXK98_22690 (rpoC)
Enzymes [BR:
veu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IXK98_22690 (rpoC)
Transcription machinery [BR:
veu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IXK98_22690 (rpoC)
DNA repair and recombination proteins [BR:
veu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IXK98_22690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QPG36208
LinkDB
All DBs
Position
1:complement(3036085..3040290)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLASPAEAEKAYRTK
TAELHARVKVRITETVKDEDGNSTTETKMVDTTIGRAMLWQIVPSGLPYSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDRMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGDTVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGVGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSTEFLVGEQVEYANVKIANRQLEAEGKELVRFERELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRVEEQEGP
SAEQATDNLAALLNAGFSADE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcgcagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggtccagtaaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgcatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcactg
ccgtctcgtatcggtctactgatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgcta
actgaagaagagtatctggatcgtctagaagagtggggtgatgagttcacggctaagatg
ggtgcagaagcgatcaaagacctacttgcgtctatggatttgcctgctgaaatcgaagaa
atgcgtgaagagcttcagtctactaactcagagactaagcgtaagaagatcactaagcgt
ctgaagctagttgaagcgttcgttcaatctggtaacaacccagagtggatgatccttact
gtgcttccggtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttc
gcgacttctgatctgaacgacctataccgccgcgtaatcaaccgtaacaaccgtttgaag
cgtctactagagcttgctgctccggacatcatcgtacgtaacgaaaagcgtatgctacaa
gagtctgttgatgcacttctagataacggtcgtcgcggtcgcgcgatcacgggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgacgacaatcaaagctgctaagaagatg
gtagagcgcgaagaagcgatcgtttgggatatcctagacgaagtaatccgcgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtattcaggcgttcgaaccagta
ctaatcgaaggtaaagcgatccagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgacaagatcaacgtg
aaaggcgaaggtatgtaccttgctagcccagctgaggctgagaaggcataccgcactaag
acggctgagctacacgctcgcgttaaagttcgtatcactgagactgttaaagacgaagat
ggcaacagcacaactgaaactaagatggttgatacaactatcggtcgtgcaatgctatgg
caaatcgtgccttcaggtcttccgtacagcatcgttaaccaaaagctaggtaagaagcag
atctctcacctacttaacgaggcttaccgtaagctaggtcttaaagacactgtaatcttc
gctgaccaaatcatgtacacaggtttcgcttacgcggcactttctggtgtatctgttggt
atcgacgacatggttgtcccagcagctaagtacactgagattgaagaagcggaagcagaa
gttcgcgaaatccaggaacagtaccaatctggtcttgtaactgcgggtgagcgctacaac
aaagtgatcgatatttgggcttcgaccaacgatcgcgtagctaagttgatgatggaaaac
ctatcttctgaaactgttgttaaccgcgacggtgaagaagagcagcaagagtcattcaac
agcatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagctt
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtacacgagcatgactgtggcacccatgaaggtgtt
gacatgatgccgcacatcgaaggtggtgacgttaaagttgcactttctgagctggctctt
ggtcgtgtagttgcagaagatgttcttaagccaggtactgaagatgtactgatcccacgt
aacactctaattgatgagaagtggtgtcagatcatggaagagaactcagttgaccgcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgctcagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcattcaagctaagacgactggtacagttaagcta
cacaacgctaagttcgttatcaacaaagacaagaagcttgtaatcacttctcgtgcatct
gaactaactatcattgatgagtttggtcgtacgaaagagaaacacaaactaccttacggt
tctctactctctaaaggcgacaacgatgcagttgaagctggcgacacagtagcgaactgg
gaagcgcacaccatgccaatcatcactgaagtggcaggtcgcatccagtttgttgatatg
atcgatggcgttacagtttctcgtcaaacagatgacctaacaggtctatcttcgagcgaa
gtaactgaagcggcagctcgcccagcagcaggtaaagatatgcgcccagctatcaaactt
gttgatgcggcaggtaacgatgtaatgatccctggtacagatatgccagcgcattacttc
ctaccaggtaaagcaatcgtaaacatcgaagacggcgctgaagtgggcgtgggtgatact
ctatctcgtatccctcagaaatctggcggtaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagccgaaagagcctgcgattcttgctgagcacaca
ggtactgtaagcttcggtaaagaaacgaaaggtaaacgtcgtctagtaatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcagcttaacgtattcgaaggc
gagaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacatgacattcta
cgtctacgtggtatccacgcagtgactcaatacatcgcgaacgaagttcaagaagtatac
cgtctacaaggcgttaagattaacgataagcacatcgaaactatcgttcgtcagatgcta
cgtaagtgtacaatcacgcacgctggtgactctacagagttcctagtgggtgagcaggtt
gaatacgcgaacgttaagattgctaaccgtcagctagaagctgaaggtaaagagctagtt
cgtttcgagcgtgagctacttggtattactaaggcatctctagcgactgaatcgttcatc
tctgcagcatcgttccaggaaacaactcgcgtactaacagaagcagccgtttctggtaag
cgtgatgagctacgtggtctgaaagaaaacgtaattgttggtcgtctaatcccagcaggt
acaggtttcgcttaccaccaagatcgtcaagctaagcgtgtagaagagcaagaaggtcct
tcagctgaacaagcgactgacaaccttgcagcactactaaacgcaggtttctctgcagac
gagtaa
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integrated database retrieval system
