Vibrio europaeus: IXK98_22695
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Entry
IXK98_22695 CDS
T07114
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
veu
Vibrio europaeus
Pathway
veu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IXK98_22695 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
veu03021
]
IXK98_22695 (rpoB)
03400 DNA repair and recombination proteins [BR:
veu03400
]
IXK98_22695 (rpoB)
Enzymes [BR:
veu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IXK98_22695 (rpoB)
Transcription machinery [BR:
veu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IXK98_22695 (rpoB)
DNA repair and recombination proteins [BR:
veu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IXK98_22695 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QPG36209
LinkDB
All DBs
Position
1:complement(3040383..3044411)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVGKVASKD
YINEATGEIIVGANQEISLEALANLSQAGHKALQTLFTNDLDHGPFMSETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSEERYDLSTVGRMKFNSSIEREDAQEQGTL
DETDIVEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIQEGQYVIAQANTVLTEQGTFSEELITARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLDGGYTEAKLDAIDRKKWLELTLEDDAQQTQLEQLAEQYDE
LRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FRDFLQKVYDLGDTRQKVDVASLSDDEVRTLIKNLRGGLPIATPVFDGASEQSIKELLKL
GDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgaaaaattcatcgaa
caggatcctgaaggtcaatacggtcttgaagctgctttccgttctgtatttccaattcag
agctacaacggcaattccgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggcgtaacttattcaaaaccactacgcgttaaacta
cgcctagttatctttgatagagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtaccttcgtaatcaatggt
accgagagggttatcgtatcccagctgcacagaagcccaggtgtattcttcgacagcgat
aagggtaagacccactcttcaggtaaagttctatacaatgcacgcgtaattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggataacctatacgtacgtattgaccgc
cgtcgtaagctaccagcatctatcattcttcgcgcactaggtaagacgactgaagagatc
ctggacatcttctttgagaaggtgaacttcgaagtgaaagatcaaactctattaatggag
cttgttcctgatcgtctacgtggtgaaactgcgtcattcgatatcgaagcaaacggcaag
acttacgttgaaactggtcgtcgtgtaactgcacgccacatccgtcagcttgaaaaagat
ggcgttgagcatatcgaagtacctgtagagtacatcgtaggcaaagttgcatcgaaagat
tacatcaacgaagcgactggcgagatcattgttggtgcaaaccaagaaatcagtctagaa
gctctagctaacctttctcaagcaggccacaaagcgctacagacgttatttactaacgat
ctagaccacggtccgttcatgtcagaaactctacgcattgacagcactgttgatcgtatt
tctgcattggtagaaatctaccgcatgatgcgccctggtgagccgccaacgaaagaagct
gctgaatcactattcgaaagcctattcttctcagaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcgaacgtgaagatgctcaagagcaaggcacactt
gacgaaactgatatcgttgaagtgatgaagaagcttatcgctatccgtaacggcatcggt
gaagtggacgatatcgaccacctaggtaaccgtcgtatccgttctgttggcgaaatggca
gaaaaccaattccgcgttggtctagtacgtgttgagcgtgctgttaaagagcgtctaagc
cttggtgatcttgatgcaatcatgcctcaagacctaatcaacgctaagcctatctctgct
gcggttaaagaattctttggctcttcacagctgtcacagttcatggaccaaaacaaccct
ctatcagaagttacgcacaagcgtcgtatctctgcattgggtcctggcggtctgactcgt
gaacgtgctggcttcgaagtacgtgacgtgcacgtaactcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagactccataccgtcgcgtagtagatggcgtagtaaca
gacgaagtagattacctatctgctattcaggaaggtcagtacgttatcgctcaggcgaac
actgttcttactgaacaaggcacattctctgaagagctaatcactgctcgtcagaaaggt
gaatctggcctacacccacgcgaacatgttgactacatggacgttgcaactaaccaggtt
gtatctatcgctgcgtcgcttatcccgttcctagaacatgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacacttaaagctgacaagcctctagtt
ggtactggtatcgagcgtaacatcgccgttgactctggtgttacagcggtagcgaaacgt
ggtggtgtaatccagtctgtagatgcttctcgtatcgttgttaaagtaaacgaagacgag
ctgatccctggtgaagcaggtatcgatatctacaacctaactaaatacactcgttctaac
caaaatacgtgtatcaaccagcgtccatgtgtgatgccgggtgaaccagttgcacgtggt
gacgttcttgctgatggtccttcaacagaccttggtgagctagcgcttggtcagaacatg
cgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcaccacgatccacattcaagagctatcttgtgtggcg
cgtgatactaagcttggtgctgaagaaatcacagctgacattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgcggaagtgaaaggcggt
gacatccttgtaggtaaagtaacgcctaaaggtgaaactcagctaactcctgaagagaag
ctactacgtgctatcttcggtgagaaagcgtcagacgttaaagacacgtctctacgcgta
ccaaactctgtttcaggtacaatcatcgacgttcaagtatttactcgtgacggtgttgaa
aaagacaaacgtgcgcttgaaattgaacagatgcagcttaaagaagcgaagaaagacctt
actgaagaattccagattcttgagggtggccttctgaaccgtgttaaagctgtacttctt
gacggtggttacactgaagcgaaactagacgctatcgatcgtaagaagtggctagagcta
acgcttgaagatgatgctcaacagactcagcttgaacagctagcagagcagtacgacgag
ctacgtgctgacttcgataagaagtttgaaactaagcgtcgtaagatcacacaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccttacgatgagaaaggtcagccggttgacatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccagatggtgaaagagcagcaagagctagctaag
ttccgtgacttcctacagaaagtttacgaccttggtgatactcgtcagaaagtagacgtt
gcgtctctatccgatgatgaagttcgtacgctgatcaagaacctacgtggtggtctaccg
atcgcgactccagtatttgacggtgcttctgagcaatcaatcaaagagctattgaaacta
ggtgacctaccagaatctggtcagctaacgctgtttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgcttcaagaaatgctaacagttaagtcggatgacgttaacggccgt
actaagatgtacaagaacatcgtagatggcaaccacagcatggaacctggcatgccagaa
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
