Vibrio furnissii: vfu_A00878
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Entry
vfu_A00878 CDS
T01680
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vfu
Vibrio furnissii
Pathway
vfu03410
Base excision repair
vfu03430
Mismatch repair
vfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
vfu_A00878
03430 Mismatch repair
vfu_A00878
03440 Homologous recombination
vfu_A00878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfu03400
]
vfu_A00878
DNA repair and recombination proteins [BR:
vfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
vfu_A00878
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
vfu_A00878
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
vfu_A00878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ADT86074
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All DBs
Position
1:896171..897910
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AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLAQLPDTIPPLLRRIYLNRGVSSVEQLEKAAKALHSYQQLHGIDAAVEL
LFEAIKQQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVE
QALAMNAEMIMTVDNGVSSIEGVRFAKQHGLSVLVTDHHLPGAELPEADAMVNPNLQQCA
FPSKALAGVGVAFYLMMALCVYMRRCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFG
VELLLSNNIHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQ
RDWHQGVIGILASRIKEQFHRPVIAFADGGDGLIKGSCRSIPGLHMRDALDKIDTQNPGI
ILKFGGHAMAAGLTIEEHNFERFSRLFDEVVRQDLDDALLKGVILTDGELAPEEFSMHVA
EMLRAGGPWGQAFPEPVFDGEFKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGNQSLQLMVDHLEAR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaattcaacgacgaccggagccagatctggctcaactcccagacaccattcct
ccactgttaagacgcatctacctcaaccgtggggtgagcagtgtcgaacaactggaaaaa
gcggccaaggcgctgcactcctatcagcaactgcacggcatcgatgccgctgttgaactg
ctgtttgaggccatcaagcagcagaagcgcatcatcgttgttggtgactttgacgccgat
ggtgccaccagttccgccttgtcggtactggcgctgcgcatgctgggtagccacaacgtg
gattatctggtgcccaaccgttttgaagacggttatggcctgagccccgaagtggtagaa
caagcgctggcgatgaacgccgagatgatcatgaccgttgataacggcgtgtcctcgatt
gaaggcgtgcgatttgccaaacaacacggactgagcgtgttggtgaccgaccaccactta
ccgggcgctgagctgccggaagcggacgccatggtcaaccccaacttgcagcaatgcgcg
tttccttccaaagcgctggctggcgtgggggtggcgttttacctgatgatggcgctgtgc
gtttacatgcgtcgttgcggctggtttgctgagcaaggcatggccgaacctaaactgatg
gaactgattgatttggtggcgttagggacggtcgctgacgtggtgccgctggatgaaaat
aaccgcattttggtacaccaaggcttacagcgcattcgtgccgggaaagcgcgtccgggg
attcaagcgctgattgaagtggctaagcgcgatgcgcgtaaactggtggcgtcggatttc
gggtttgcattggggccgcggattaacgccgcagggcgtctcgatgacatgtcctttggg
gtggagttgctgctgagcaacaacattcacgcggcgcggcgcatggccagtgaactggat
ggcctcaatcagacgcgcaaagagattgaagagggcatgaaacaagaagcgatggcgttt
tgtgaacggctgcaatttggcaaagacaccgagttgccacacggcttggtgatgttccaa
cgcgattggcatcagggcgtgattggcattttggcctcgcgtatcaaagagcagtttcat
cgtccggtgattgcgtttgccgatggcggtgacggcttgattaaaggctcttgtcgctcc
attccaggcctgcacatgcgagacgcactcgacaaaatcgacacacagaatccgggcatc
attctgaagtttggtggccacgccatggcggcgggattaacgattgaagagcacaatttt
gagcgttttagccgcctgtttgacgaggtggtgcgtcaggatctcgatgacgcgctgctc
aaaggcgtgattctgactgatggcgaattggcgccggaagagttttcgatgcacgtggct
gaaatgctgcgcgcaggcggcccgtggggacaagcgtttccagagccggtgtttgatggt
gagtttaaagtcctgcatcaaaagctggtgggggagaagcatctcaagttgatgttggag
ccgctgcataaaggtcacccgaccaacatcatgatcgacggtatcgcgtttaacgtggat
ttgcgtcgctggcctgatgcttcagtgaaaaccgtccgcctcgcttacaaactcgatatc
aacgagtttcgcggcaaccaatctttgcagttgatggtcgatcatctcgaagcacgataa
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