Vagococcus fluvialis: K5K99_04435
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Entry
K5K99_04435 CDS
T07851
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5K99_04435 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfv03021
]
K5K99_04435 (rpoB)
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_04435 (rpoB)
Enzymes [BR:
vfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5K99_04435 (rpoB)
Transcription machinery [BR:
vfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5K99_04435 (rpoB)
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5K99_04435 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UDM74829
LinkDB
All DBs
Position
842548..846123
Genome browser
AA seq
1191 aa
AA seq
DB search
MVGHVVKYGKHRERRSYSKISEVLELPNLIEIQTDSYKWFLDEGLREMFEDIMPITDFSD
KLSLEFVDYEMKEPKYTVEEARAHDANYSAPIHVTLRLDNQVTGEIKSQEVFFGDFPLMT
EMGTFIINGAERVVVSQLVRSPGVYFNGKTEKNGQQGFGTTVIPNRGAWLELETDAKNLS
YARIDRTRKIPFTVVVRALGFGSDSTIMEIFGESESLQATIEKDIHKNSGDSRTEEALKD
VYERLRPGEPKTAESSRNLLNSRFFDPKRYDLAAVGRYKLNKKLNLKTRLLNQTLAETLV
DPETGEIVAEKGTVISRQVMDTLEEHLDNGINSVTYYPSEDGVVTEPMTVQVIKVLSPKD
PERVVNVIGNGNLEDKVKTVRPADIIATMSYFLNLQEDIGNVDDIDHLGNRRIRSVGELL
QNQFRIGLSRMERVVRERMSIQDTETLTPQQLINIRPVVASMKEFFGSSQLSQFMDQTNP
LSELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK
VNKYGFIETPYRRVDRANGKVTEHIDYLTADEEDHYMVAQANSPLNEDGSFAEELVMARI
QSENLEVSIEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP
IVGTGMEYKAAHDSGAALLCKHDGVVEYVDAKEIRVRRNNGALDKYNVIKFHRSNAGTSY
NQRPIVSLGEIVEAGDTLADGSSMEQGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD
DVYTSIHIEEYESEARDTKLGPEEITRELPNVGDDALKDLDEMGIIRIGAEVKDGDLLVG
KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELAPG
VNMLVRVYIVQKRKINEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS
RMNIGQVLELHLGMAARSLGIHVATPVFDGADEDDVWATVAEADLARDAKTILYDGRTGE
PFDNRISVGVMYMLKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEILTYKSDDVVGRVKTYESIVKGEPIQKPGVPESFRVLVKELQALGLDMRV
LDADDQELELRDMDDEDDDLITVDALAKYAKEQAEKEKLEQSLKDAQEGKE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
ttggttggacacgttgtcaaatacggaaaacaccgagaaagacgcagttattcaaagatt
agtgaagtattggaactgccaaatttaattgaaattcaaacagattcttacaaatggttc
ttagatgaaggtttaagagaaatgtttgaagatattatgccaattacagattttagtgac
aagttatcattagaatttgtagattacgaaatgaaagaacctaagtacacagtagaagaa
gctcgtgcacatgacgctaactattcagcgccaatccatgtaacattaagactagacaac
caagtaactggtgaaatcaaatctcaagaggtattctttggagatttccctctaatgact
gaaatgggtacattcatcatcaatggtgcagaacgcgttgtcgtatcacagttagttaga
tcacctggtgtttactttaatggtaaaactgagaaaaatggtcaacaaggctttggtaca
acagttatccctaaccgcggggcatggctagagttagaaacagatgctaaaaacttatct
tacgctcgtatcgaccgtacaagaaaaattccatttacagtagtggttcgtgctttaggt
tttggatcagattctactattatggaaatctttggtgagagtgaaagtttacaagctact
attgaaaaagatattcataaaaactcaggagattctcgtacagaagaagctcttaaagat
gtttatgaaagattacgtccaggtgaaccaaaaacagctgaaagttcaagaaacttatta
aactctcgtttcttcgatccaaaacgctatgatttagctgctgtaggtcgttacaaatta
aacaaaaaattaaacttaaaaacacgtttattaaaccaaacattagctgaaactttagtg
gatcctgaaacaggagaaattgttgctgaaaaaggaactgttatctctcgtcaagtaatg
gatacattggaagaacatttagacaatggtattaatagtgttacttactatccaagtgaa
gacggtgttgtaactgaaccaatgacagttcaagttattaaagttttatctcccaaagac
ccagagcgcgttgttaacgtaatcggtaacggaaacttagaagataaagttaaaacagtt
cgtcctgctgatattattgcaacaatgagttacttcttaaacttacaagaagacattggt
aatgttgatgatattgaccatttaggtaaccgtcgtattcgttcagttggtgagttatta
caaaaccaattccgtatcggtttatctcgtatggaacgtgtggtacgtgagagaatgtct
atccaagacactgaaacattgactcctcaacaattgattaatatcagacctgttgtagct
tcaatgaaagaattctttggttcttctcagttatctcagttcatggaccaaacaaaccca
ttaagtgagttaactcataaacgtcgtctatctgccttagggcctggtggtttaacacgt
gaccgtgctggatatgaagttcgtgacgttcactactctcactacggtcgtatgtgtccg
attgaaacacctgagggaccaaatatcggtcttatcaacagtttatcaagttacgctaaa
gtgaataaatatggatttatcgaaacaccttaccgtcgtgtagaccgtgctaatggtaaa
gttacagagcatattgattacttaacagctgacgaggaagaccactacatggtagctcaa
gcgaactctccattaaatgaagacggaagctttgctgaagaattagtaatggctcgtatc
caaagtgaaaacttagaagtttcaattgaaaaagttgactacatggacgtttctccaaaa
caagtagttgcggtagcgacagcatgtattcctttcttagaaaacgatgactctaaccgt
gcacttatgggagcgaacatgcaacgtcaggctgttccattaattcaaccacgttctcca
attgttggtactggtatggaatataaagccgctcatgactcaggtgcagctcttttatgt
aaacacgatggtgttgttgaatatgtagatgctaaagaaatccgtgttcgtcgtaataac
ggtgctttagataaatataatgtgattaaattccaccgttcaaatgctggtacaagttac
aaccaacgcccaattgtttctttaggcgaaatcgttgaagctggagatactttagcagat
ggttcttctatggaacaaggtgaaatggctttaggacaaaacgttttagtagcattcatg
acatgggaaggttacaactacgaggatgcgattattatgagtcgtcgtcttgttaaagac
gatgtttatacatctattcatattgaagaatatgaatcagaagctcgtgatacaaaactt
ggacctgaagaaattactcgtgagttaccaaacgtcggagacgacgctcttaaagactta
gacgaaatgggtattatccgtatcggtgctgaagttaaagatggtgatttattagtaggt
aaagtaacgcctaaaggagttactgaattatcagctgaagagcgtttattacacgctatc
tttggtgaaaaagctcgtgaagttcgtgatacttcattacgtgtaccacatggtggtggc
ggtattgttcatgatgttaaaatctttactcgtgaagcaggggacgagttagcacctggt
gttaacatgttagtccgtgtttatatcgttcaaaaacgtaaaatcaacgaaggtgacaag
atggccggtcgtcatggtaataaaggggtagtttctcgtattatgccagaagaagatatg
ccgtttcttccagatggaacacctgttgatatcatgttaaaccctcttggggtaccttct
cgtatgaatatcgggcaagtacttgagttacacttaggtatggctgctcgttcattaggt
attcatgtagcaactccagtatttgatggagctgacgaggatgatgtgtgggctactgta
gcagaagcagacttagctcgtgatgctaaaactatcctttatgatggacgtactggtgaa
ccatttgataaccgtatttctgttggggttatgtacatgctgaaacttgctcacatggtt
gatgacaagctacatgctagatcaattggaccatactcattagtaacgcaacaaccactt
ggaggtaaagctcaatttggtggacaacgttttggtgagatggaagtttgggctcttgaa
gcttacggagctgcttacacattacaagaaatcttaacttacaagtcggatgacgttgta
ggtcgtgtgaaaacatatgaatcaattgttaaaggtgaacctattcaaaaacctggtgta
ccagaatcattccgagttcttgtaaaagaattacaagctttaggattagatatgcgtgta
ttagatgcagacgatcaagagcttgaattacgtgacatggatgacgaagatgatgattta
atcacagtggatgctttagctaaatatgctaaagagcaagctgaaaaagagaaattagaa
caatcattaaaagatgcacaagaaggcaaggaatag
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integrated database retrieval system
