Vibrio harveyi: AL538_08655
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Entry
AL538_08655 CDS
T04380
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL538_08655 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vhr03021
]
AL538_08655 (rpoB)
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_08655 (rpoB)
Enzymes [BR:
vhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL538_08655 (rpoB)
Transcription machinery [BR:
vhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL538_08655 (rpoB)
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL538_08655 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF6155
Motif
Other DBs
NCBI-ProteinID:
AMF97781
UniProt:
K5TTE9
LinkDB
All DBs
Position
1:complement(1833488..1837516)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSEEILDIFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKTYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKD
YVNEATGEIIVNANQEISLEALANLSQAGHKSLETLFTNDLDHGPFMSETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTL
DELDIVEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGIVT
DEVDYLSAIEEGQFVIAQANAALTEEGGFADELITARQKGESGLHPREHAQYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVSRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLIEGGYSEAKLDTTDRKKWLELTLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGETRQKVDIASLSDDEVRTLIKNLRGGLPIATPVFDGAPEASIKALLKL
ADLPESGQLKLFDGRTGDQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgacaaattcatcgaa
caggatcctgaaggtcaatacggtcttgaagctgctttccgttctgtattcccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttactcaaagccactacgcgtaaaacta
cgtctagtaatctttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtaccttcgtaattaacggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaagacccactcttcaggtaaagttctatacaacgcacgtgttattccttaccgt
ggctcatggttagactttgagttcgaccctaaggataacttatacgtacgtattgaccgc
cgtcgtaagctaccagcttcgatcatccttcgtgcacttggtaaaacgtcagaagaaatc
ctagatatcttcttcgaaaaagtgaacttcgaagtgaaagaccaaactctactaatggag
ttggttcctgatcgtctacgtggtgaaactgcgtcattcgacatcgaagcgaacggtaaa
acttacgttgagcaaggtcgtcgtgtaacagctcgtcatatccgccaactagagaaagat
ggcgttgatcacatcgaagtaccagttgagtacatcgttggtaaagttgcatcgaaagat
tacgtcaacgaagcaacaggcgagatcattgttaacgctaaccaggaaatcagcctggaa
gctctagcgaacctatctcaggctggccacaaatcactagaaacgttgttcaccaacgat
ctagaccatggtccattcatgtcagaaacgctacgcatcgacagcactgttgatcgtatt
tctgctttggtagaaatctaccgcatgatgcgccctggtgagccaccaacaaaagaagct
gcagaagcactattcgaaagcctattcttctctgaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcggtcgtgaagatgctcaagagcaaggcacactt
gacgagctagatatcgttgaagtgatgaagaagcttatcgcgattcgtaacggtaaaggc
gaagtggacgatatcgaccacctaggtaaccgtcgtatccgctctgtaggcgaaatggct
gagaaccagttccgtgtaggtctagtacgtgttgagcgtgcagttaaagagcgtctaagc
ctaggcgatcttgacgcaatcatgcctcaagacttgatcaacgcgaaaccaatctctgca
gctgttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattgggtcctggcggtctaactcgt
gaacgtgctggcttcgaagtacgtgacgtacacgtaactcactacggtcgtctatgtcct
atcgaaacgccggaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagacaccataccgtcgcgttgtagatggcattgtaaca
gacgaagtagattacctatctgcaatcgaagaaggtcaattcgttatcgcacaggctaat
gctgcgttaactgaagaaggcggttttgcagatgagctgatcacagctcgtcaaaaaggt
gaatctggtctacaccctcgtgagcacgctcagtacatggacgttgcgacaaaccaggtt
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacactgaaagctgacaaaccgcttgtt
ggtactggtattgaacgtaacgtagcagttgactcaggtgtaactgcagttgctaaacgt
ggtggtgtaatccagtctgtagatgcttctcgtatcgttgttaaagtgaacgaagaagag
ctagtaccaggtgaagctggtatcgacatctacaatctgactaaatacacacgttctaac
cagaacacatgtattaaccagcgcccatgtgtgatgccaggtgaacctgtatcacgcggt
gacgttcttgctgatggtccttcaacagaccttggtgaactagcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaatggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgactatccacatccaagaacttacttgtgtggcg
cgtgatactaagcttggttctgaagagatcacagctgatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgcagaagttaagggtggc
gacatcctagttggtaaagtaacacctaaaggtgaaactcagctaacgcctgaagagaag
ctactacgtgcaatcttcggtgaaaaagcatctgacgttaaagatacttcactacgtgta
cctaactctgtatcaggtacgatcatcgacgttcaagtcttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaacaaatgcagcttaaagaagcgaagaaagaccta
actgaagaattccagattcttgagggtggccttctaaaccgtgttaaagctgtactgatt
gaaggtggttactctgaagcgaaactagacacaactgatcgtaagaagtggctagaacta
acgctagaagatgacgctctacaaactcagctagaacaactagcagagcagtgggacgag
ctaaaagctgacttcgataagaaattcgaaactaagcgtcgcaagatcactcaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgtatt
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggtattggtgacaagatcaaccagatggttaaagagcagcaagaactagcgaaa
ttccgcgagttcctacaaaaagtttacgatctaggcgagactcgccagaaagtagatatt
gcttctctatctgatgacgaagttcgtactctgatcaagaacctacgtggcggtctacca
atcgcgactccagtatttgacggtgcaccagaagcgtctattaaagcgctactgaaacta
gcagacctaccagaatctggtcagctaaaactgtttgatggtcgcacaggtgaccagttt
gagcgccctgtaacagtaggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgcggcttacactctacaagaaatgctaacggttaagtcggatgacgttaacggccgt
actaagatgtacaaaaacatcgtagacggtaaccacagcatggaacctggtatgccagaa
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
