Vibrio harveyi: AL538_09100
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Entry
AL538_09100 CDS
T04380
Name
(GenBank) sensor domain-containing phosphodiesterase
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vhr
Vibrio harveyi
Pathway
vhr05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
AL538_09100
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
AL538_09100
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GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
YPEB_N
Motif
Other DBs
NCBI-ProteinID:
AMF97854
UniProt:
A0ABM5XX54
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All DBs
Position
1:complement(1913899..1916385)
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AA seq
828 aa
AA seq
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MRAFSQLVQNVDQLNDFLVTSQCCADKRYLVQLLSTQSRDSAASLARAILERLPNTHIIG
HSTRHVILEGEIINHGCLVCVMEFEQTTLTSAVQHYSFSPDIDGYDLKQALQLQDNSKAI
ISFSVQIERRDYPVYRVFDADGPKVSGGLAQTIDDGCWVLHQDQVYDEAVVAVALHSNTL
KTWTSAYSEWNPIGMPHKVTHAKGTRLYRLGERKALEVYKHYLADGHDLSLNQLLNFPLY
RESIGRKEVCAVTEIHPDGSMSFDRPWCLGDEVQFCYNHPSLTLEQVRHGVVELSMHQPE
AVMIYNCASRLDFIDSSDEVRAFTDISHTSGSYCMGELYGENHQQEILHHSLTYLAMREG
DEVAALNMPQQEVSTSISPLFSLIRNAIGDLNNMNAHMGYQLDRQAKKLEQSFRRDSRTG
LQNRVALQERLISIDTDEHLLTLKLLNFSHINEKYGYRVGDQLLKDLSMHFSNRLRKRLG
KPAALQLYSIGVGEWAFLFKADGSSEMIKQHFTRFADAVEQTNFEPSGLRDIDYLSISLC
GGLVSRRDFPTASPDELLLKGIEARRAGVRSNTHICNAKDIEVNEDVRKEQLGWLSCVSR
AILKQNIITYSQPIVHAYNHRPASQECLVRIMEEDGSIIAPGRFLPIISDTHLYTRLSRH
MIRSTLNYMKDKQGDFSINLSPQDLLSDKTLMLLEHAITQLNDPRRIGLEVLESEQIKDY
GRMIEVCSHFRSLGARIIVDDFGSGYSNIDEILKLEPEVIKLDGSLIRYIDKDQKQRKIA
SQLVRLCQVFNAKTVAEFVHNKEVCDIAQDMGVDYLQGYYLGEPTRLF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcattctctcaactggttcaaaatgtggatcagcttaatgactttttagtcact
tctcagtgttgtgcagataaacgttatctggtgcaactcttatccactcaatcacgcgac
tccgccgcctcgcttgcacgggcaatactcgaaagattacccaacacgcatatcatcggt
cacagcacccgtcacgttatcttggaaggtgaaatcatcaaccatggctgcttagtgtgt
gtgatggagtttgaacaaaccacgctcacgtctgcggttcagcattattccttctcgcca
gatatcgatggctacgatctcaagcaagctttacaactgcaagataactccaaagccatt
attagcttttctgtccaaatcgaacgccgtgattatccggtgtatcgcgtatttgatgcc
gacggtccgaaggtttctggcggtttggctcaaaccatcgatgacggttgttgggttctg
catcaagaccaagtttatgatgaagcggttgtcgcggttgccttgcacagcaatactttg
aaaacatggacgagcgcgtattctgagtggaacccgattggtatgccgcataaggttact
cacgccaaagggacgcgcttgtatcgcttgggcgagcgtaaagcgttggaagtgtacaaa
cattaccttgctgacgggcacgacctatcgctcaatcaactgctgaatttcccactttat
cgagaatccattgggcgaaaagaggtgtgtgccgtgacggaaatccatcccgacggcagc
atgagcttcgaccgtccttggtgtttgggtgatgaagttcagttctgttacaaccatcct
tcgttaacgcttgagcaagttcgccatggggtggtggagctttccatgcatcaacctgaa
gccgtgatgatttataactgcgcatcgcgacttgattttattgatagcagcgatgaagtt
cgtgccttcacggacatttctcacacgtcgggcagttactgtatgggcgagttgtacggc
gagaatcaccaacaagaaattctgcaccatagcctgacttacttggcgatgcgtgagggg
gatgaagttgctgcgcttaatatgccacagcaagaagtgagcacttctatctctcccttg
tttagcctgatccgcaatgcgattggcgatctaaataacatgaacgctcatatggggtat
caactcgatcgccaagcgaaaaagctagaacagagcttccgccgagatagccgcacagga
ttacaaaatcgtgttgcgctgcaagagcgtttgatcagcattgataccgatgagcattta
ctgacgctcaaactgcttaactttagccatatcaacgaaaagtacggttatcgcgttggc
gaccaactgctgaaagacttgtcgatgcactttagtaatcgcctgcgtaaacggcttggt
aaacctgccgcgctgcaactttatagcattggtgtcggtgagtgggcgttcttattcaaa
gctgacggaagcagtgaaatgattaagcaacacttcactcgctttgctgatgcggttgag
caaaccaactttgaaccaagtggcttacgagatattgattacctttcgatttcattgtgc
ggtggcttagttagccgtcgtgattttccaactgcatcgccggatgaattgctcctcaaa
ggcattgaagcgcgaagagcaggggtgcgaagtaatactcatatctgtaatgccaaagac
attgaggtcaatgaagatgtgcgaaaagagcagttgggttggttgagctgtgtgagccgc
gccattctcaagcagaacatcattacctacagtcagccaattgtgcacgcttacaaccat
cgtcccgcgagccaagagtgtttggtgcgcatcatggaagaggatggcagcatcattgcg
ccggggcgtttcttacctatcatttctgatacgcatttgtacacgcgtttgagccgtcac
atgatccgttccacgttgaattacatgaaggacaaacaaggcgacttctcaattaatttg
tcacctcaggatttactcagcgataaaaccttgatgttgcttgaacatgctattactcag
ctgaacgacccaagacggattggtttagaagtcttggagtcggagcaaatcaaagactac
gggcgaatgattgaggtgtgcagtcactttagaagcctaggtgcacgcatcattgtggat
gattttggttcgggttactccaatattgatgagatcctcaagttagagccagaagtgatt
aagctcgatggcagtttgattcgttatatcgacaaagaccagaagcagcgcaagattgcc
tcgcagttggtgcgtttgtgtcaggtgtttaacgctaagactgtcgcggagttcgtgcac
aacaaagaggtgtgcgacattgctcaggacatgggggtggactatctgcaaggttattat
ttgggtgaaccgacacgcttgttttaa
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