Vibrio sp. STUT-A11: VspSTUT11_02930
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Entry
VspSTUT11_02930 CDS
T10419
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vib Vibrio sp. STUT-A11
Brite
Messenger RNA biogenesis [BR:
vib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VspSTUT11_02930
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GFIT
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NCBI-ProteinID:
BDR12317
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Position
1:374629..376638
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLTTNNAVVYRFKDTSHKIEASVLFEKEYPLAHNQD
YMIYFKAIPPYLGYGYSMQALWSITLAVVLIIFCLMRGVAWLKEQLAGSEMLEERGRMIL
AGRVEQYAKGDKSEWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESSLLESGARGAVMLVRLHDWKLAEEEQDKQVTDDFIVEVGSLLSNLVQRYPDV
VFSRYYDSDFALFLPHQDAKGVANLATQCIRQLEKLTPPEPLEADNWCHIGITMFKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHEEEVRGSVRWRTLFDKALTPENVILYAQP
VYVMNDAPHKKPLYEAVTCRIQDPENGIVKASRFIAAVRQVGYEAQMDKAVVNKFLSSFK
DNFNHPNSYTLSLTVTPFASREYFKWFRYELLQLSREQRKCLNFEFVEAQFVRHLDFMRP
VAKMLAGLGCQLMIGQAGRTIVSSHYLKEVDIRYLKLHRSLVTKIDQRHENQLFIRSMLG
AAANSKTKIVAVGIENRNELNTLLELGVYGGQGRYFSTERQFLPRPQKVQPTRSESQVKP
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaacgcttaaactaagcacgcggctggtggcttttgtcaccatgatc
gtgatctgcgcaatgtttattttgtttgtcggcggcaccctctcttttaaacggcttggg
caagaatatcttacccattatttagaagggatcgttgaggtggtcgataaggagatggaa
gatccggatgcggcatactccatgcagcgctggatgcccaaaatgctgcaggccagcaac
attgtagaaatgacgctgacgaccaataatgcggttgtatatcggtttaaagatacatct
cataagatagaagcgtctgtcttatttgaaaaagagtaccctctggctcacaaccaagat
tatatgatctattttaaggcgatacctccttacttaggttacggttactcgatgcaagca
ttatggtcgatcacgttggcagtggttttgatcattttttgtttgatgcgtggcgttgct
tggttgaaagagcagttagcaggatcagaaatgctggaagagcgtggccgaatgattttg
gctggccgtgttgagcaatatgcaaaaggtgataaatcggagtggccttataccgctagt
gaagcgctcgatgtgttgattgaagagttgcaagatgcgcgtcaggagcgcagcaggttc
gatactttcatacgaacacaaacatttttagacaagctaacgggaacggcgaaccgagta
ttgttcgacagtaaattggaatcgtctttactggaaagcggcgcacgtggtgcggtgatg
cttgtacgtcttcatgactggaagttagctgaagaggagcaagataagcaagttactgat
gattttattgttgaagtcggcagcctgctatcaaacttggttcagcgttacccagacgtg
gtattttcgcgttactacgactctgattttgcgttgtttttgcctcaccaagatgcaaaa
ggggttgcgaacctcgccacacaatgcattcgtcagcttgaaaaattgacgccgccagaa
cctttggaagcagacaattggtgtcatatcggcatcaccatgtttaaagaaggtgagcgt
catagccagattattgatgaagcagaaactgcattgcgcagtgctcagctacaaaacaac
aataactggagtcgttttaaaaagtggaatcatgaagaggaggttcggggaagcgttaga
tggcgcacattgtttgataaagcgctgactcccgaaaatgtgatactgtatgcacaacct
gtttatgtgatgaatgatgcgcctcataaaaaaccactgtatgaagcggtgacctgtcgg
attcaagaccccgaaaacggcattgtaaaagcgtccaggtttattgcagcagtcagacag
gtcggttatgaagcacaaatggataaggcggtggttaataaattcttaagtagttttaag
gataactttaatcatcccaattcctatacattgagtctgactgttaccccatttgctagc
cgagaatatttcaaatggtttcgttatgaattgctacagctgtcacgtgaacaaagaaag
tgtctcaattttgagtttgtggaagcacaatttgtaagacacttagactttatgcgacca
gtggctaaaatgctggctggtttaggttgccaactgatgatagggcaagcagggcgaacg
atagtcagtagccactatttgaaagaggtcgacattcgttaccttaagctccatcgcagc
ttagtcacaaagattgatcagcggcatgaaaaccagctgtttattcgcagtatgttaggt
gctgccgcaaacagtaaaaccaaaattgtggcagtgggtattgagaaccggaatgaatta
aatactttacttgagttaggtgtatacggtggtcaaggtcgctatttctctacagagcga
caatttcttcctcgtccgcaaaaggtgcagcctactcggtcagaatcccaagttaagcca
gggagacgaaatcgctggcgtaaaaaataa
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