Vibrio sp. dhg: DBX26_14515
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Entry
DBX26_14515 CDS
T11094
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vid Vibrio sp. dhg
Pathway
vid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DBX26_14515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vid03021
]
DBX26_14515 (rpoC)
03400 DNA repair and recombination proteins [BR:
vid03400
]
DBX26_14515 (rpoC)
Enzymes [BR:
vid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DBX26_14515 (rpoC)
Transcription machinery [BR:
vid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DBX26_14515 (rpoC)
DNA repair and recombination proteins [BR:
vid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DBX26_14515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXT72133
LinkDB
All DBs
Position
1:complement(3114154..3118356)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPAEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTSTGMVDTTIGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYAGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQAKNNGSIKL
HNAKSVVADDGKIVITSRATELTIIDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDSGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGEQVEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRTEAQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagagtttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atttttggtccagttaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccaggtatgactgatctagaaaagagtcagatgctt
actgaagaagagtatctagaccgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcagaagctatcaaggaccttctaggttctatggatatgcacgctgaagcggaacaa
atgcgcgaagagttagaaacgactaactctgaaactaagcgtaagaaagttactaagcgt
ttgaagctggtagaagcgtttattcaatctggtaataaccctgaatggatgatcctgact
gtacttcctgtacttccgccggatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttctgatctaaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcagctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtgggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggttgtttgggatatcctggacgaagtaatccgtgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagcagaggctgagaaagcataccgcactaaa
caagctgaacttcacgcacgcgttaaagtacgtattactgaaacagtcgtagacgaagac
ggcaacagcacaacatctactggtatggttgacaccactatcggtcgtgcaatgctttgg
caaatcgtgccagctggtcttccgtacagcatcgttaaccagaagctaggtaagaaacaa
atctctaacctacttaacgaggcgtaccgtaagctaggtctgaaagacacagtaatcttc
gctgaccaaatcatgtacgcaggttttgcttacgcagcactatctggtgtatctgttggt
atcgacgatatggttgtaccgccagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatctggtcttgttactgcgggcgaacgctacaac
aaagttatcgatatctgggcatcgaccaacgaccgcgttgcgaaagcaatgatggagaac
ctgtcatctgaaacggtagttaaccgtgacggtgaagaggaacaacaagagtcgttcaac
agcatctacatgatggccgactcaggtgctcgtggttctgcagcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgcgtccagatggctcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgagggtgtt
gacatgatgcctcatatcgagggtggtgatgttaaagttgcactttctgagctagctcta
ggtcgtgtagttgctgaagacgttctaaaacctggtactgaagatgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtacgttctgttgttacttgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtaggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagcagaaaacagcgttcaagcgaagaacaatggttctatcaagcta
cacaacgctaaatcagtagtggcagatgacggtaagatcgttatcacttctcgtgcgact
gaactaaccatcattgatgagtttggccgtactaaagagaaacacaaactgccttacggt
acactactaagcaaaggcgacggtgacacagttcaagctggtgaaactgtagctaactgg
gaagcgcacacactaccaatcatcactgaagtagcgggtcgcatccagttcgtagacatg
atcgacggtgtaacagtttctcgccaaacagatgacctaacaggtctatcttcaagcgaa
gtaactgacgcagcagcgcgtccatctgcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggtaaagcgattgtaaacatcgaagatggcgcagcagtaggcgtaggtgcaaca
cttgcacgtattcctcagaaatctggcggtaacaaagatatcaccggtggtcttccacgc
gttgctgacctgttcgaagcacgtaagcctaaagagcctgcgatccttgctgaacacaca
ggtacagttagcttcggtaaagagaccaaaggtaagcgtcgtctagtgatcactcgcgac
agcggtgaagcatacgaagagatgattcctaagcatcgtcagcttaacgtcttcgaaggt
gagaaggttgagcgtggtgatgtaatcgctgatggtccagagtctccacatgacatccta
cgtctacgtggcgtacacgcggtaactcagtacatcgctaacgaagtacaagaagtttac
cgtctacaaggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgcta
cgtaagtgtactatcacatttgctggtgattctgagttcctacctggtgagcaagtagaa
tactcacaagttaagattgctaaccgtaatctagaagctgaaggcaaagagcctgcgcgt
ttcgaacgtgaacttctaggtattaccaaagcgtctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgacctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgtactgaagcgcaagaaggcccgtct
gctgaacaagcaacggataacctggcagcacttctaaacgctggcttctcttctgaagaa
taa
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