Vibrio sp. HB236076: AB0763_12380
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Entry
AB0763_12380 CDS
T10847
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB0763_12380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vih03021
]
AB0763_12380 (rpoC)
03400 DNA repair and recombination proteins [BR:
vih03400
]
AB0763_12380 (rpoC)
Enzymes [BR:
vih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB0763_12380 (rpoC)
Transcription machinery [BR:
vih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB0763_12380 (rpoC)
DNA repair and recombination proteins [BR:
vih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB0763_12380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
XDK24947
UniProt:
A0AB39HE43
LinkDB
All DBs
Position
1:complement(2813312..2817514)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDMQAEAEQMREELETTNSETKRKKITKRLKLVEAFITSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREMINAKGEGMYLAGPAEAEKAYRTK
SAALHARVKVRITETVRDEDGNDTTETKMVDTTVGRAMLWQIVPKGLPFSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPEAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMSNLSSETVINRDGEEEEQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEKDCGTHEGVEMMPHIEGGDVKVALTELAL
GRVVAEDVLKPGTQEVLIPRNTLIDEKWCQIMDENSVDKLKVRSVVTCDSDFGCCSNCYG
RDLARGHLVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSIKL
NNAKSVTNNEGKHVITSRATELTIIDEFGRTKEKHKLPYGSILSKADGEAVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPSAGKDMRPAIKL
IDSQGNDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGETYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTEYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGEQVEYTQVKIANRELEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKREEAIEGPS
AEQASDNLAALLNAGFASEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcgtggtcttttggtgaagtgaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgaacgcgatggtttgttctgtgcgcgt
atttttggtccagtaaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcat
cgtggtgtcatctgtgagaagtgtggcgttgaagtcacacagactaaagttcgtcgtgac
cgcatgggccacattgagcttgcttctcccgttgcacacatctggttcctaaaatcactg
ccgtctcgcatcggtttgttgatggatatcccattgcgcgatatcgaacgtgtgctttac
ttcgaaatgtacgtggtgactgagccaggtatgacggatctcgaaaagagtcagatgctg
actgaagaagagtatctagaccgtctcgaagagtggggtgatgaattcacggctaagatg
ggtgcagaagcgatcaaagacttgttggcctcaatggacatgcaagctgaagctgagcag
atgcgcgaagaattagaaaccactaattctgaaaccaaacgcaaaaaaatcactaagcgc
ttgaagttggttgaagcgttcattacttcaggtaacaaccctgagtggatgatcttgacg
gtacttcctgtactaccgcctgatctgcgtcctctcgttccgctcgatggcggccgtttt
gccacgtctgatctgaacgacttgtaccgtcgtgtgattaaccgtaacaaccgtctaaaa
cgcctacttgagttggctgcaccagacatcatcgtacgcaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctgcttgacaacggtcgtcgcggtcgtgcaatcaccggttcgaac
aaacgtccacttaagtcgcttgccgacatgatcaaaggtaaacaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactctggccgttctgttatcaccgttggtccatac
ttgcgtctacaccagtgtggtcttcctaagaagatggcacttgagctatttaaaccgttt
atctacagcaagctggaaactcgtggtctcgcgacaacgatcaaagccgcgaagaaaatg
gttgagcgtgaagaagcggtcgtttgggatatcttggatgaagttatccgcgaacaccca
gtactgctaaaccgtgcaccgacacttcaccgtcttggtatccaggcgtttgaacctgtc
cttatcgaaggtaaagcgattcagttgcaccccttggtttgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggtccacgtgcctctaacgctagaagcacagcttgaagcg
cgtaccctaatgatgtcgactaacaacatcttgtcgccagcatcgggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgaaatgatcaacgcg
aagggcgaaggcatgtaccttgctggccctgctgaagcggaaaaagcgtaccgtactaag
agcgcagcgctacacgcacgcgttaaagttcgtatcacggaaaccgttcgcgacgaagat
ggtaacgacaccacagaaaccaagatggtggataccactgtcggccgtgctatgttgtgg
cagatcgtaccgaaaggcttgccgtttagcatcgttaaccaaaaattaggtaagaaacaa
atctctaacctacttaacgaggcttaccgcaaactgggtctgaaagacacggttattttt
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtttctgttggt
atcgacgacatggtggtaccagaggcgaaatacaccgagattgcggaagcggaagaagaa
gttcgcgaaattcaagaacagtaccaatctggtcttgttaccgcgggtgagcgctacaac
aaagtgatcgatatttgggcttcaaccaacgatcgcgttgcgaaagctatgatgagcaac
ctgtcttctgaaaccgtgatcaaccgcgatggcgaagaagaagaacaagagtcattcaac
agcatctacatgatggctgactcgggcgctcgtggttctgctgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcacgtccagatggttctatcatcgaaacgccaatcacg
gcgaactttaaagaaggtctaaacgtccttcagtactttatctcaacccacggtgctcgt
aagggtcttgcagatacggcattgaagacagcgaactcgggttacttgactcgtcgtctc
gttgacgttgcccaagatgtggttgtcacagaaaaagactgtggtacacacgaaggtgtc
gaaatgatgccacacatcgaaggtggtgacgttaaagtggctctgactgagcttgcgcta
ggtcgtgttgtcgctgaagatgttctaaaaccaggtacgcaagaggttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggatgagaactcagtcgacaaactg
aaagtacgttcagtggtaacctgtgattcagactttggctgttgttcaaactgttacggt
cgtgaccttgctcgtggtcacttggtgaaccaaggtgaatcggttggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttcaatcaagctc
aacaacgcgaagtcagtaaccaacaacgaaggtaagcacgtgattacctctcgtgcgaca
gaattgaccatcatcgatgaattcggtcgtactaaagagaaacacaaacttccttacggc
tctatcttgagcaaagccgatggtgaagccgttcaagcgggcgaaaccgtggcaaactgg
gaagcgcacaccttgccaatcatcactgaagtggccggtcgcattcaattcgttgatatg
attgatggcgtaaccgtctctcgtcaaactgatgatttgacaggtctttcttcaagtgaa
gtgacggatcctgccgctcgtccatcggcgggtaaagacatgcgtccagcgattaagctg
attgattcgcaaggtaacgacgtgatgattcctggtacggatatgccagctcagtacttc
ctacctggtaaagcgatcgtgaacattgaagacggcgccgaagtaggtattggtgatact
ctagcacgtattcctcagaaatctggtggtaacaaagatatcaccggtggtctacctcgc
gttgcggacctctttgaagctcgtaagccaaaagagcctgctatccttgctgagcataca
ggtacggtctccttcggtaaagaaaccaaaggtaagcgtcgcctagtgatcactcgcgaa
ggtggtgagacttacgaagagatgattcctaagcatcgccaattgaacgtgttcgaaggt
gagaaagtggaacgtggcgatgtgatcgctgatggtccagagtctccacatgatattcta
cgtctacgtggtatccacgccgtgacagaatacatcgccaacgaagttcaagaagtttac
cgtctgcaaggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgcta
cgtaagtgtacaattactcatgctggtgactctgagttcctacctggtgagcaagttgaa
tatacacaagttaaaattgcaaaccgtgagctcgaagcagaaggcaaagagccggctcgt
ttcgaacgtgaattgcttggtatcactaaggcatctttggcgacagaatcgttcatctct
gcagcgtcgttccaagaaaccactcgcgtcctaacggaagcggcggtctctggtaagcgc
gatgaccttcgcggtctgaaagagaacgtgattgttggtcgtctgatcccagccggtacc
ggttttgcgtatcaccaagaccgtcaagcgaagcgtgaagaagcgatcgaaggtccttcg
gctgagcaagcttctgacaacttagcggcattgttaaatgcaggctttgcttcagaagag
taa
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integrated database retrieval system
