Viridibacillus arvi: JNUCC6_14860
Help
Entry
JNUCC6_14860 CDS
T06874
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vij
Viridibacillus arvi
Pathway
vij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC6_14860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vij03019
]
JNUCC6_14860
03009 Ribosome biogenesis [BR:
vij03009
]
JNUCC6_14860
Enzymes [BR:
vij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNUCC6_14860
Messenger RNA biogenesis [BR:
vij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC6_14860
Ribosome biogenesis [BR:
vij03009
]
Prokaryotic type
rRNA helicases
JNUCC6_14860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOV09875
LinkDB
All DBs
Position
3001795..3003243
Genome browser
AA seq
482 aa
AA seq
DB search
MSGKSFKDYKLSNEIVNALNSLEYKNPTEVQSKVIPLVLENKDLVVKSQTGSGKTASYGI
PICELVDWKENKPQALILTPTRELAVQVKEDFTNLGRFKRIKATAVYGKQPFAIQKTELK
QKTHVVVGTPGRVMDHIEKGTLALDQIRYLVIDEADEMLNMGFIEQVEAIIKELPRKRVT
MLFSATLPEAVKNLALNYMKKPTDIEIKATGLTTDKIDHALVVVEENNKLSILKDVTIVE
NPDSCIIFCRTKDRVDTLCEQLADLGYSCDKIHGGMVQDIRLEVMNDFKRGDFRYLIATD
VAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGQKGKAITLVTPFEDKFLSEIEEY
IGFEIPHMEVPSKEEVLNKKSDFEEKMNIEPMLKKAKSEKLNKQIMKLYFNGGKKKKLRA
VDFVGTIAKIDGVTVEDIGIITILDAFSYVEILNDKGPIVLKNMKNTTIKGKLLKVYEAN
KK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaaaaagttttaaagattataaattaagtaatgaaatcgtaaatgcgctgaat
agcttagaatacaaaaatccaacagaggttcaaagtaaagtaataccactagtcttggag
aataaagaccttgtcgttaaatcccaaacaggtagtggtaagacggcttcttacggaatt
ccgatatgtgaattagttgattggaaagaaaataaacctcaagcattaatcttaacacca
actagagaactggctgttcaagtaaaagaggatttcacaaatttaggtagatttaaacgt
attaaagcaacggctgtttatggcaaacaaccctttgccatccaaaagactgaattaaag
caaaaaacgcatgtagttgtgggtactccaggtcgtgtcatggatcatattgagaaaggc
actctagctctagatcagattcgctatcttgtaattgatgaagcagatgaaatgttgaat
atgggattcattgaacaagtggaggctattattaaagaattaccgcgaaaaagagtgacg
atgttattttctgcaactttgccagaggcagttaaaaacttagctcttaactatatgaaa
aaacctactgatattgaaattaaggctactggacttacaacggataaaattgaccatgca
ctagtcgttgtagaggagaataataagctttctatcctgaaagatgtaacaattgtagaa
aatccagatagctgtattattttttgccgaacaaaagatcgagtagatactttgtgcgaa
caattagcagatttaggttatagttgtgataagattcatgggggcatggtacaggatatt
cgtctagaagtgatgaatgattttaaacgtggcgatttccgttatttaatagcaacagat
gtagctgctagaggaattgatattgataatattacacacgtcattaactacgatcttcct
ttagagaaagaaagctatgtccatcgtacaggaagaactggacgagcgggtcaaaaaggg
aaagccatcacgttagtgacaccatttgaggataaatttttaagtgaaattgaagagtat
attggttttgaaattccgcacatggaagttccatcaaaagaagaagttctaaataagaaa
tctgattttgaagaaaaaatgaatattgaaccaatgttgaaaaaagcgaaaagcgaaaaa
ttaaacaaacaaataatgaaattgtattttaatggtggtaagaaaaagaaactgagagca
gtagattttgttggaacgattgcaaaaatcgacggtgtaacagtagaggatataggaata
atcacaatcttagatgcattttcttatgttgaaatattgaatgataaaggtccgattgtg
ttgaaaaacatgaagaatacgactataaaaggtaaactattgaaggtatatgaagctaat
aagaagtaa
DBGET
integrated database retrieval system
